Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq6377 86.0 5e-12 seq48357 84.2 2e-11 >seq6377 Length=1564332 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || ||||| || || |||||||||||| | | ||| |||||| | ||| Sbjct 1467458 TGAAGAGTCGATTCCTTCTGGATGTTGTAATCGGCGAGAGTGCGTCCATCTTCGAGCTGT 1467517 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| | || |||||||| |||||| || | ||||| ||||| |||||| Sbjct 1467518 TTTCCAGCAAAGATCAGCCTCTGCTGATCGGGTGGAATCCCTTCCTTGTCTTGAATTTTA 1467577 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG-TTTCCACGGTAATGGTTTTGCCGGT 20184 || || | | ||| | || || || || ||||| || || ||||||||||| Sbjct 1467578 GCCTTGACGTTGTCAATTGTGTC-AGAGCTTTCGACTTCCAGAGTGATTGTTTTGCCGGT 1467636 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 || ||||||||||| || ||||| Sbjct 1467637 CAGGGTTTTGACAAAGATCTGCAT 1467660 >seq48357 Length=423913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | ||| | || | ||| || || || || ||||| ||||| || ||| || Sbjct 187680 CCACCACGGAGCCTTAGGACAAGATGCAGGGTGGACTCCTTTTGAATGTTATAGTCGGCC 187621 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| | ||| || |||||| | || | ||||| ||||| || Sbjct 187620 AGAGTCCTCCCATCTTCAAGTTGCTTCCCCGCAAAGATCAATCTCTGCTGATCAGGAGGA 187561 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | || |||||||| || || ||||| | ||| || ||| || | || Sbjct 187560 ATCCCCTCTTTGTCCTGGATCTTCGCCTTCACATTATCAATAGTATCAG-AGCTCTCAAC 187502 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | ||| ||||| |||||||||| |||||||||||||||||||| Sbjct 187501 TTCAAGGGTGATGGTCTTGCCGGTCAGAGTTTTGACAAAAATTTGCAT 187454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397838057062257