Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq12734 107 2e-18 seq5369 96.9 3e-15 seq74129 93.3 3e-14 seq6287 91.5 1e-13 seq3210 86.0 5e-12 seq9751 84.2 2e-11 seq1025 84.2 2e-11 >seq12734 Length=494798 Score = 107 bits (118), Expect = 2e-18 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||||||||| ||||| || ||||| ||| | || |||||||| || ||| | | Sbjct 183455 TCCTTTTGAATATTGTAGTCTGCCAAGGTTCGGCCATCTTCCAGCTGTTTTCCGGCAAAT 183396 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTT---GATA 48652 |||| ||||||||| ||| ||| | | |||||||||| || || |||| || Sbjct 183395 ATTAGACGCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTT-AGCTTTCACATT 183337 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || |||||||| | |||| || | |||||| || ||||||||||| |||||| Sbjct 183336 GTCG--ATGGTATCTGAGCTCTCCACTTCCAATGTTATCGTCTTACCGGTGAGGGTTTTC 183279 Query 48713 ACAAAAATCTGCAT 48726 ||||| |||||||| Sbjct 183278 ACAAAGATCTGCAT 183265 >seq5369 Length=633823 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC--GCTCGTCCTCCAGC 48580 ||| |||||| ||||| |||||||||||||||||||| |||| || | ||||||| | Sbjct 631197 ATGCAGTGTGGATTCCTTCTGAATGTTGTAATCAGCCAA-TGTCCTGC-CATCCTCCAAC 631254 Query 48581 TGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATT 48640 |||||||| || |||| | | |||||| ||| || | || |||||||||| ||| Sbjct 631255 TGCTTACCAGCGAAAATGAGCCTCTGCTGGTCCGGTGGAATACCTTCCTTGTCCTGAATC 631314 Query 48641 TTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 || ||| | | | ||||| || | ||| || | || || ||||| || Sbjct 631315 TTGGACTTTACATTATCAATGGTGTCTGAGCTCTCAACTTCTAAAGTAATTGTTTTTCCA 631374 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||| ||||| || ||||| Sbjct 631375 GTGAGGGTTTTGACAAAGATTTGCAT 631400 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||| || || ||||| |||||||||| ||| | || |||||||||||||| | | Sbjct 231793 CTCTTTCTGGATGTTATAATCAGCCAGGGTACGCCCATCTTCCAGCTGCTTACCAGCAAA 231852 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| || | |||||||| ||| | || ||||||||| || || ||| | | Sbjct 231853 AATCAACCTTTGCTGATCTGGCGGGATACCCTCCTTGTCCTGGATCTTAGCCTTCACATT 231912 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || ||||| | | |||| ||| | || |||||||| || || || |||||||| Sbjct 231913 ATCAATTGTATCTGAACTCTCCACCTCCAAAGTAATGGTTTTCCCAGTAAGGGTTTTCAC 231972 Query 48715 AAAAATCTGCAT 48726 |||||||||||| Sbjct 231973 AAAAATCTGCAT 231984 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||| || || ||||| |||||||||| ||| | || |||||||||||||| | | Sbjct 287820 CTCTTTCTGGATGTTATAATCAGCCAGGGTACGCCCATCTTCCAGCTGCTTACCAGCAAA 287879 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| || | ||||||||| || | || ||||||||| ||||| ||| | | Sbjct 287880 AATCAACCTCTGCTGATCTGGTGGGATACCCTCCTTGTCCTGGATTTTAGCCTTCACATT 287939 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || ||||| | ||| ||| | || |||||||| || || || |||||||| Sbjct 287940 ATCAATCGTATCTGAGCTCTCGACCTCCAAAGTAATGGTTTTCCCAGTAAGGGTTTTCAC 287999 Query 48715 AAAAATCTGCAT 48726 |||||||||||| Sbjct 288000 AAAAATCTGCAT 288011 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||| || || ||||| |||||||||| || | || |||||||||||||| | | Sbjct 370042 CTCTTTCTGGATGTTATAATCAGCCAGGGTACGTCCATCTTCCAGCTGCTTACCAGCAAA 370101 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| | | ||||| ||| || | || ||||||||| ||| || ||| | | Sbjct 370102 AATCAGCCTTTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGAATCTTAGCCTTCACATT 370161 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || ||||| | | |||| ||| | ||| |||||||| || || || |||||||| Sbjct 370162 ATCAATCGTATCTGAACTCTCCACCTCCAATGTAATGGTTTTCCCAGTAAGGGTTTTCAC 370221 Query 48715 AAAAATCTGCAT 48726 |||||||||||| Sbjct 370222 AAAAATCTGCAT 370233 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| |||||||| ||||||||||| || |||| || |||||||| || || | Sbjct 630753 CTCCTTCTGAATGTTATAATCAGCCAAAGTACGTCCGTCTTCGAGCTGCTTTCCAGCGAA 630812 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | | ||| ||||| || | | ||||||||| || || ||| | | Sbjct 630813 TATCAGTCTCTGTTGATCAGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTTACATT 630872 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | |||||||| | |||| ||| | ||| |||||||| || || || |||||||| Sbjct 630873 ATCAATGGTATCCGAGCTCTCCACCTCCAGTGTAATGGTTTTCCCAGTAAGGGTTTTCAC 630932 Query 48715 AAAAATCTGCAT 48726 |||||||||||| Sbjct 630933 AAAAATCTGCAT 630944 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||| ||||| || |||| ||| |||| || |||||||| || | | Sbjct 232930 TCCTTCTGAATATTGTAGTCGGCCAGGGTTCGGCCGTCTTCTAGCTGCTTTCCCGCAAAG 232989 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | |||||||||||| || | | |||||||||| || || ||| | | Sbjct 232990 ATCAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTG 233049 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | || || |||| | || ||||| || || || ||||| ||||||||||| ||| Sbjct 233050 TCAATAGTGTCGGAACTTTCAACCTCGAGGGTGATCGTCTTACCAGTGAGAGTTTTAACA 233109 Query 48716 AAAATCTGCATCGTG 48730 || ||||||||| || Sbjct 233110 AAGATCTGCATCTTG 233124 >seq74129 Length=283392 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||||||||| |||||||| ||| ||||||||| ||||||||| || || Sbjct 223858 TCCTTCTGAATGTTGTAGTCAGCCAAAGTTCGACCGTCCTCCAATTGCTTACCGGCGAAA 223799 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | | |||||| || || | | |||||||||| || || ||||| | Sbjct 223798 ATAAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTA 223739 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | |||||||||| | ||| || | || || || || || || || ||||| ||| Sbjct 223738 TCAATGGTATCGGAACTCTCAACTTCCAAGGTGATCGTCTTGCCAGTAAGGGTTTTGACA 223679 Query 48716 AAAATCTGCAT 48726 || |||||||| Sbjct 223678 AAGATCTGCAT 223668 >seq6287 Length=202565 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 || || || |||||||||||||| | ||| ||||||| |||||||| || || | Sbjct 72505 TCTTTCTGGATGTTGTAATCAGCAAGGGTTCGTCCGTCCTCAAGCTGCTTTCCTGCGAAG 72446 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | ||||||||| || || | | |||||||||| || || || | | Sbjct 72445 ATCAGACGCTGCTGGTCGGGGGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTAACATTG 72386 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| || | ||| ||||| || ||||| ||||||||||||||||| ||| Sbjct 72385 TCAATGGTGTCAGAGCTCTCGACCTCGAGAGTGATGGTCTTACCGGTGAGAGTTTTGACA 72326 Query 48716 AAAATCTGCATCGTG 48730 || ||||||||| || Sbjct 72325 AAGATCTGCATCTTG 72311 >seq3210 Length=179012 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| |||||||||||||| || || || ||||||||||||||||||| || | Sbjct 104032 CTCCTTCTGAATGTTGTAATCTGCTAAGGTCCGACCGTCCTCCAGCTGCTTACCAGCGAA 103973 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | | |||||| || || | | |||||| ||| || || ||| | | Sbjct 103972 GATAAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTAACATT 103913 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | |||||||| | | ||| || | || || || || |||||||| |||||||| Sbjct 103912 ATCAATGGTATCAGAACTCTCAACTTCTAAAGTGATCGTCTTGCCGGTGAGGGTTTTCAC 103853 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 103852 AAATATCTGCAT 103841 >seq9751 Length=53254 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/236 (69%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 48494 TCAAAACCT-CCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTA 48552 |||||||| || |||| | || |||| ||||| || ||| || || ||||| || Sbjct 9066 TCAAAACCCGCCACGCAGACGCAAGACTAGGTGAAGCGTAGACTCTTTCTGGATGTTATA 9007 Query 48553 ATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGAT 48611 |||||| || || ||| | ||||||||||||||||| || | || | | |||||||| Sbjct 9006 ATCAGC-AAGAGTACGCCCATCCTCCAGCTGCTTACCAGCGAATATGAGCCTCTGCTGAT 8948 Query 48612 CCACCGGCACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTA 48670 | || | | |||||||||| ||| || ||| || | | | || ||||||| Sbjct 8947 CAGGAGGAATCCCTTCCTTGTCCTGAATCTT-TGCTTTTACATTATCGATCGTATCGGAG 8889 Query 48671 GACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| ||| | ||| || || || || || | || |||||||| |||||||| Sbjct 8888 CTCTCAACCTCCAGTGTAATCGTCTTGCCTGTCAACGTCTTCACAAATATCTGCAT 8833 >seq1025 Length=463399 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCC 48574 ||| | ||| || || |||||||||||||||||| |||||||| ||| || | ||| Sbjct 46403 CACCAGATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCCAAG-GTC-CTACCATCC 46346 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 |||||||||||||| | |||| | | ||||||||| ||| | | |||||||||| Sbjct 46345 TCCAGCTGCTTACCAGCAAAAATAAGCCTCTGCTGATCTGGCGGAATGCCTTCCTTGTCC 46286 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | ||||| || | ||| || | || || || Sbjct 46285 TGGATCTTGGCCTTGACGTTATCGATGGTGTCCGAGCTCTCAACTTCCAAAGTAATTGTC 46226 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || ||||| ||||| |||||||| Sbjct 46225 TTACCAGTCAGGGTTTTGACAAAGATCTGCAT 46194 Score = 82.4 bits (90), Expect = 6e-11 Identities = 91/120 (76%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| |||||| ||||| |||||||||||||||||||||| | | ||||||| ||| Sbjct 115551 ATGCAGTGTGGATTCCTTCTGAATGTTGTAATCAGCCAATTTCCTGCCATCCTCCAACTG 115610 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| | |||| | | |||||| | || || | || |||||||||| ||| || Sbjct 115611 CTTACCGGCAAAAATGAGCCTCTGCTGGT-CAGGGGGATACCTTCCTTGTCCTGAATCTT 115669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399415804255097