Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq369028 87.8 2e-12 seq56275 84.2 3e-11 >seq369028 Length=352451 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 ||| || ||||| | || | ||| || | ||| | || ||||||||||| | |||||| Sbjct 63457 TCCACCTTGATCAACATAACGAGCAGTATCATTGAATACCCTCAACATTGGCACAATACC 63516 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || |||||| || | | |||||||| ||| | ||| Sbjct 63517 ATTCGATGTGCCATTAGTTCCTCGGATATAACTACTGGTTGCACGAATGTTATGTACTGA 63576 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| | ||| || || ||| |||| || ||| |||| || ||||| || Sbjct 63577 AACACCAAGTCCTCCAGCTGATTTGCTTATTACGGCACATTCCTTTAGAGTATCATATAT 63636 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 ||||| ||||||||||| |||| || || || |||||| Sbjct 63637 CCCCTCAATGCTATCATCTTTCATACAAACAAGGAAGCAGCTA 63679 >seq56275 Length=114807 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 63365 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63424 |||| |||||| ||||||| || | ||| || | |||| | || | ||||||||| | Sbjct 26235 TTTGCCTCCTCCTTGATCTACATAGCGAGCAGTATCATTAAACACACGCAACATTGGCAC 26176 Query 63425 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACT 63484 |||||| |||||| | ||||| || || || || || | | |||||||||| Sbjct 26175 AATACCATTTGATGTGCCATTTGTTCCACGTATGTAACTATTTGTTGAACGAATATTATG 26116 Query 63485 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 || || | || || || ||||| ||| || | || ||| ||| | || || Sbjct 26115 GATCGAAACTCCAATGCCTCCTGCTGATTTGCTAATCACAGCACATTCTTTGAGGGTATC 26056 Query 63545 ATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 ||| ||||| || ||||||||||| |||| | ||||| |||||| Sbjct 26055 ATAAATACCTTCAATGCTATCATCCTTCATACAGATAAGAAAGCAGCTA 26007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589829014156520