Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq73847 104 6e-17 seq14209 95.1 3e-14 seq145027 89.7 1e-12 >seq73847 Length=1089629 Score = 104 bits (114), Expect = 6e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||||||| | | |||||||||||| ||| || ||||| | ||| || || || | Sbjct 999583 TGCTTTCTTATCTATATGAAGGACGATAACATTGATGGTATTTATGATACCCTCAAAGAA 999642 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 |||| | | ||| || ||||| || ||||| || |||||||| ||| ||||| || Sbjct 999643 TGTGTTGTGATTAGAAAACCAGCAGGAGGTATTGGAGTTTCGATCCATAATATTCGTTCA 999702 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCG 363785 | || |||||||| || || ||| || || || ||||| | || || ||| | | Sbjct 999703 AAAAATAGTTACATACGTGGAACA-AATGACACATCAAATGGCATTGTGCCAATGTTGTG 999761 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAA 363829 ||||||| | ||||||| | || || || || || ||||||| Sbjct 999762 TGTGTTTAATGATACTGCTTGCTATGTAGATCAAGGAGGAGGAA 999805 >seq14209 Length=330277 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/139 (76%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 22524 TTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGG 22583 ||| ||| || ||| |||||||| || |||||| | || ||||| | | ||||| || Sbjct 251921 TTTTTTTAATGCAGC-TTTTGTGCCATATTTTGGTTGAAGAAACGGGGCTTAATGCCAGG 251979 Query 22584 TCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 | |||| |||||||||||||| ||| | ||||||||||||||| |||||||| || Sbjct 251980 TTTAACTTTTTCAAATGAGTTGATTTCAAGGGATGAGGGTCTTCATTGTGATTTTGCTTG 252039 Query 22644 TATGCTATATCGGAATCAT 22662 | | || ||| || || || Sbjct 252040 TCTCCTTTATAGGTATGAT 252058 >seq145027 Length=675400 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 46895 TAACCACCAACTGATCCAAATGATTTCGTAAAGGTTCCCATCATTACATCAATATTTGAA 46954 ||||| ||| |||||||||||||||||| ||||| |||||||| |||||||||| ||| Sbjct 327987 TAACCTCCACATGATCCAAATGATTTCGTGAAGGTGCCCATCATAACATCAATATCCGAA 327928 Query 46955 GTGTTAATATTGAAATGTTCAGCAACTCCACGGCCCGTTTGTCCAGTTGCGCCGATAGAA 47014 || | | | | | ||| | ||| | || |||| |||| || || ||| | Sbjct 327927 GTATCCACTCCTAGAAGCTCACAGATTCCCCTTCCTGTTTTTCCAACAGCTCCAATACTA 327868 Query 47015 TGTGCTTCATCCAGGTATAAAT 47036 ||||||||||||| ||||| || Sbjct 327867 TGTGCTTCATCCAAGTATATAT 327846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1232330206021854