Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq74129 104 2e-17 seq131301 95.1 1e-14 seq48357 95.1 1e-14 seq30079 95.1 1e-14 seq37697 91.5 1e-13 seq562416 87.8 1e-12 seq37696 86.0 5e-12 seq23608 86.0 5e-12 seq13870 86.0 5e-12 seq12734 86.0 5e-12 seq91917 82.4 6e-11 seq6925 82.4 6e-11 seq5713 82.4 6e-11 >seq74129 Length=283392 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| || ||||||||||| || ||| | ||| |||| | Sbjct 223896 ATGCAAATCTTTGTGAAAACCCTGACGGGAAAAACTATCACCCTGGAAGTGGAGAGCTCA 223955 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || || ||| ||||| || ||| |||| ||| ||| Sbjct 223956 GACACCATTGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGCATCCCACCTGACCAG 224015 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || |||| ||| || || || | ||||||| || |||| ||||||||| Sbjct 224016 CAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAAGATGGACGTACTCTGGCTGATTATAAC 224075 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||| || || |||||| | ||| ||||| Sbjct 224076 ATTCAGAAGGAATCTACTCTGCATCTGGTG 224105 >seq131301 Length=117942 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| || || |||||||| || ||| | ||| |||| | Sbjct 108674 ATGCAAATCTTTGTGAAAACCCTAACAGGAAAAACTATCACCCTGGAAGTGGAGAGCTCA 108733 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || || ||| ||||| | ||| |||| ||| || Sbjct 108734 GACACCATTGATAATGTGAAGGCTAAGATTCAGGATAAGTAGGGCATCCCACCTGACCAA 108793 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || |||| ||| || || | || ||||||| || |||| ||||||||| Sbjct 108794 CAGAGGCTGATTTTTGCTGGTAAGTAGTTGGAAGATGGACGTACTCTGGCTGATTATAAC 108853 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||| || || |||||| ||||| ||||| Sbjct 108854 ATTCAGAAGGAATCTACTCTACATCTGGTG 108883 >seq48357 Length=423913 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||||||||| || || || || ||||| ||| | ||| ||| | Sbjct 187454 ATGCAAATTTTTGTCAAAACTCTGACCGGCAAGACCATCACCCTTGAAGTTGAGAGCTCT 187513 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | || || || || || ||||| || | || ||||||| Sbjct 187514 GATACTATTGATAATGTGAAGGCGAAGATCCAGGACAAAGAGGGGATTCCTCCTGATCAG 187573 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||| | || | |||||| || ||| | ||||||| | || ||||||| |||||| Sbjct 187574 CAGAGATTGATCTTTGCGGGGAAGCAACTTGAAGATGGGAGGACTCTGGCCGACTATAAC 187633 Query 115466 ATTCAAAAAGAGTCTAC 115482 |||||||| ||||| || Sbjct 187634 ATTCAAAAGGAGTCCAC 187650 >seq30079 Length=424873 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| || | ||||||||| || ||| | ||| |||| | Sbjct 366466 ATGCAAATCTTTGTGAAAACCCTGATGGGAAAAACTATCACCCTAGAAGTGGAGAGCTCA 366525 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || || ||| ||||| || ||| |||| ||| || Sbjct 366526 GACACCATTGATAATGTGAAGGCTAAGATTCAGGATAAGGAGGGCATCCCACCTGACCAA 366585 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || |||| ||| || || || | ||||||| || |||| ||||||||| Sbjct 366586 CAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAAGATGGACGTACTCTGGCTGATTATAAC 366645 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||| || || |||||| | ||| ||||| Sbjct 366646 ATTCAGAAGGAATCTACTCTGCATCTGGTG 366675 >seq37697 Length=33129 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| | ||||||||||| || ||| | ||| |||| | Sbjct 22691 ATGCAAATCTTTGTGAAAACCTTGACGGGAAAAACTATCACCCTGGAAGTGGAGAGCTCA 22750 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || || || || || || || |||| ||||||| Sbjct 22751 GACACCATTGATAATGTGAAGACCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAG 22810 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | ||| || || || | ||||||| || |||||||||||||| Sbjct 22811 CAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACTCTGGCCGATTATAAC 22870 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||| || || |||||| | ||| ||||| Sbjct 22871 ATTCAGAAGGAATCTACTCTGCATCTGGTG 22900 >seq562416 Length=95391 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 115269 TTTATAAGAGATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCG 115328 ||| | |||| || |||||||| || ||||| || || | || ||||||||||| || Sbjct 18276 TTTTTTAGAG-TTCAAAATGCAGATATTTGTGAAGACATTGACCGGAAAAACCATAACTC 18334 Query 115329 TCGAAACGGAGTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAG 115388 |||| ||| | |||||| ||| | ||||| || || || || || | Sbjct 18335 TCGAGGTCGAGAGCTCAGACACTATTGATAATGTAAAGGCGAAGATCCAGGACAAGGAGG 18394 Query 115389 GCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAA 115448 | | ||| |||||| || || || |||| ||| |||||||| | || |||| | || Sbjct 18395 GAATTCCCCCTGATCAACAGAGGCTCATTTTTGCTGGCAAACAGCTTGAGGATGGCCGAA 18454 Query 115449 CCATGGCCGATTATAACATTCAAAAAGAGTCTACT 115483 || | || |||||||||||||| || || || ||| Sbjct 18455 CCCTCGCAGATTATAACATTCAGAAGGAATCCACT 18489 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||||||||| || || |||||||| || || | ||| ||| | Sbjct 53731 ATGCAGATCTTTGTCAAAACCCTGACCGGAAAAACAATCACGCTTGAAGTCGAGAGCTCA 53790 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGA-AGGCGTCCCCGTTGATC 115403 |||||| ||| |||| || || |||||| ||||| || ||| ||| | |||| Sbjct 53791 GACACTATTG-ACAACGTCAAGGCCAAAATTCAAGATAAGGAGAGGATTCCTCCC-GATC 53848 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || | || | ||| || || ||| | ||||||| | || ||||||| || | Sbjct 53849 AGCAGCGATTGATCTTTGCAGGGAAGCAACTTGAAGATGGGAGGACTCTGGCCGACTACA 53908 Query 115464 ACATTCAAAAAGAGTCTAC 115482 ||||||||||||| ||||| Sbjct 53909 ACATTCAAAAAGAATCTAC 53927 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || ||| | || || || ||||| || | || ||| | Sbjct 53959 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACCATCACTCTGGAGGTTGAGAGCTCT 54018 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || ||| |||||| ||||| ||||| | || ||||||| Sbjct 54019 GATACGATTGATAATGTCAAAGCTAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAG 54078 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || |||| ||| ||||| ||||| || |||| | |||| |||||||||||||| Sbjct 54079 CAGAGGCTCATTTTTGCTGGCAAGCAATTGGAGGATGGCCGAACCCTGGCCGATTATAAC 54138 Query 115466 ATTCAAAAAGAGTCTAC 115482 |||| || || || || Sbjct 54139 GTTCAGAAGGAATCCAC 54155 >seq37696 Length=25399 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||| |||| ||||| ||||| | ||||||||||| || ||| | ||| |||| | Sbjct 18453 ATGAAAATCTTTGTGAAAACCTTGACGGGAAAAACTATCACCCTGGAAGTGGAGAGCTCA 18512 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || || || || || || || |||| ||||||| Sbjct 18513 GACACCATTGATAATGTGAAGACCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAG 18572 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | ||| || || || | ||||||| || |||||||||||||| Sbjct 18573 CAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACTCTGGCCGATTATAAC 18632 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||| || || |||||| | ||| ||||| Sbjct 18633 ATTCAGAAGGAATCTACTCTGCATCTGGTG 18662 >seq23608 Length=1529151 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || ||| | ||||| || ||||| || | || ||| ||| Sbjct 17385 ATGCAGATATTTGTGAAGACGTTGACGGGCAAGACCATCACTCTGGAGGTTGAGN--AGC 17442 Query 115346 ---GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || ||| | || ||| |||||| ||||| ||||| | || |||| Sbjct 17443 TCTGATACGATTGATAATGTCAAAGCTAAAATTCAAGATAAGGAAGGTATTCCTCCTGAT 17502 Query 115403 CA-GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 || ||| ||||| |||| ||| ||||| ||| | || |||| | |||| |||||||||| Sbjct 17503 CANGCAGAGACTCATTTTTGCCGGCAAGCAACTGGAGGATGGCCGAACCCTGGCCGATTA 17562 Query 115462 TAACATTCAAAAAGAGTCTAC 115482 ||||||||| || || || || Sbjct 17563 TAACATTCAGAAGGAATCCAC 17583 >seq13870 Length=168034 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||| |||| ||||| ||||| || || |||||||| || ||| | ||| |||| | Sbjct 166932 ATGAAAATCTTTGTGAAAACCCTGACAGGAAAAACTATCACCCTGGAAGTGGAGAGCTCA 166873 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || || ||| ||||| || ||| |||| ||| || Sbjct 166872 GACACCATTGATAATGTGAAGGCTAAGATTCAGGATAAGGAGGGCATCCCACCTGACCAA 166813 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || |||| ||| || || || | ||| ||| || |||| ||||||||| Sbjct 166812 CAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAATATGGACGTACTCTGGCTGATTATAAC 166753 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||| || || |||||| | ||| ||||| Sbjct 166752 ATTCAGAAGGAATCTACTCTGCATCTGGTG 166723 >seq12734 Length=494798 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| ||||| ||||| || || || ||||| | ||| ||| | Sbjct 183720 AATGCAAATTTTTGTTAAAACCCTCACTGGTAAGACAATTACTTTGGAAGTTGAGAGCTC 183779 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | || || || || || ||||||||| | || ||| || Sbjct 183780 GGACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAAGAAGGCATTCCACCTGACCA 183839 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | || || | ||| || || || | ||||| | || |||| ||||||| || || Sbjct 183840 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTCGAAGACGGCAGAACCTTGGCCGACTACAA 183899 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 |||||||| ||||| || | ||| |||| Sbjct 183900 TATTCAAAAGGAGTCGACCCTGCATCTGGT 183929 >seq91917 Length=92309 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| | ||||||||||| || ||| | ||| |||| | Sbjct 77829 ATGCAAATATTTGTGAAAACCTTGACGGGAAAAACTATCACCCTGGAAGTGGAGAGCTCA 77888 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || || ||| ||||| || ||| |||| | | ||| Sbjct 77889 GACACCATTGATAATGTGAAGGCTAAGATTCATGATAAGGAGGGCATCCCTCCTCACCAG 77948 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 | || || |||| ||| || || || | ||||||| || | | ||||||||| Sbjct 77949 TAGAGGCTGATTTTTGCTGGTAAGCACATGGAAGATGGACGTACTCTTGTTGATTATAAC 78008 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||| || || |||||| | ||| ||||| Sbjct 78009 ATTCAGAAGGAATCTACTCTGCATCTGGTG 78038 >seq6925 Length=347220 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || ||||| | || || ||||| |||||| | || ||| | | Sbjct 133497 ATGCAGATCTTCGTGAAAACCTTGACTGGGAAAACTATTACCTTGGAGGTAGAGAGCTCC 133438 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || |||||| ||||| || || |||| || ||| Sbjct 133437 GACACCATTGATAATGTGAAGGCGAAAATTCAGGATAAGGAGGGTATCCCTCCCGACCAG 133378 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || |||| ||| || ||||| | ||||||| || |||| ||||||||| Sbjct 133377 CAGAGGCTGATTTTTGCTGGTAAACAGCTGGAAGATGGACGTACTCTGGCTGATTATAAC 133318 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||| || ||||||||| | || ||||| Sbjct 133317 ATTCAGAAGGAGTCTACTCTGCACCTGGTG 133288 >seq5713 Length=447580 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| || || || || || | ||||| || ||||| | | | ||| || | Sbjct 301941 AAGATGCAGATCTTCGTAAAGACCTTGACGGGCAAGACCATAAGCTTAGAAGTTGAAAGC 301882 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || || || | | |||| || || |||||| || | |||||| || | | || Sbjct 301881 AGTGATACAATCG-ACAATGTGAAGGCAAAAATCTAGGACAGAGAAGGGATCTCGCTCGA 301823 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||| || || | |||| |||||||||| ||||||| | || |||| ||||| Sbjct 301822 CCAGCAACATCTGATATTTGCGAGCAAACAATTGGAAGATGGCCGCACTCTGGCAGATTA 301763 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 || |||||||||||||| || | ||| | |||||||| Sbjct 301762 CAATATTCAAAAAGAGTCAACCTTGCATCTTGTGTTGAG 301724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403296455523640