Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq420155 93.3 4e-14 seq10718 91.5 2e-13 seq61505 89.7 5e-13 seq82193 87.8 2e-12 seq31534 87.8 2e-12 seq447577 86.0 7e-12 seq172236 86.0 7e-12 seq100831 86.0 7e-12 seq34568 86.0 7e-12 seq195928 84.2 2e-11 seq159968 84.2 2e-11 seq50688 84.2 2e-11 seq462937 82.4 8e-11 seq328882 82.4 8e-11 seq289246 82.4 8e-11 seq203205 82.4 8e-11 seq162088 82.4 8e-11 seq115137 82.4 8e-11 seq91934 82.4 8e-11 seq23063 82.4 8e-11 >seq420155 Length=249114 Score = 93.3 bits (102), Expect = 4e-14 Identities = 79/95 (83%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTC-GGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | | || | | || Sbjct 144532 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTCTGAGGGC 144591 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| |||||||| |||| || Sbjct 144592 GTGGGTTCAAATCCCACTTCTGACAAACTATTTTT 144626 >seq10718 Length=933719 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/106 (80%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 || |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 533764 ACTGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 533823 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| || ||||| |||||| ||| | || ||||||| Sbjct 533824 GCGTGGGTTCAAATCCCACTTCTGACATTTTAAT-TTTTAATTTTT 533868 >seq61505 Length=566717 Score = 89.7 bits (98), Expect = 5e-13 Identities = 76/92 (83%), Gaps = 4/92 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 227256 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 227199 Query 126328 TTCGAACCCCACACCTGACAAA--TTATTATT 126357 ||| || |||||| ||| |||| |||||||| Sbjct 227198 TTCAAATCCCACAGCTGTCAAAATTTATTATT 227167 >seq82193 Length=610086 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 12429 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGGAAGGGCGT 12372 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| |||||| Sbjct 12371 GGGTTCAAATCCCACAGCTGTCAAATT 12345 >seq31534 Length=387603 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/106 (79%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 126247 TTTTGCGCTTCTATTTACA---GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAG 126303 |||| ||| || |||||| |||||| ||||||||||||||||||||||||| | ||| Sbjct 92193 TTTTTCGCATCCTTTTACATGTGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAG 92134 Query 126304 ATCTGGT--TCCCTCGGGAGCGTGGGTTCGAACCCCACACCTGACA 126347 |||||| || | | | |||||||||| || ||||| |||||| Sbjct 92133 TTCTGGTGCTCGATTGAGGGCGTGGGTTCAAATCCCACTTCTGACA 92088 >seq447577 Length=53372 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 32527 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 32584 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| |||||| Sbjct 32585 TTCAAATCCCACAGCTGTCAAATT 32608 >seq172236 Length=150210 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| || | | | ||| Sbjct 57803 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCAATTGAGGGCG 57862 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| |||||||| |||||| Sbjct 57863 TGGGTTCAAACCCCACTTCTGACA 57886 >seq100831 Length=263549 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| || | | | | Sbjct 260481 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGATTGAGGG 260422 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 260421 CGTGGGTTCAAATCCCACTTCTGACA 260396 >seq34568 Length=183403 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| || | | | ||| Sbjct 103164 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGATTGAGGGCG 103223 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 ||||||| || ||||| |||||||| Sbjct 103224 TGGGTTCAAATCCCACTTCTGACAAA 103249 >seq195928 Length=60816 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| |||||||||||||||||||||||| | ||| |||||||| | | | | || Sbjct 32354 AGTCAGGAAGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCAATTGAGGGC 32295 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 32294 GTGGGTTCAAATCCCACTTCTGACA 32270 >seq159968 Length=822866 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 781710 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 781653 Query 126328 TTCGAACCCCACACCTGACAAAT 126350 ||| || |||||| ||| ||||| Sbjct 781652 TTCAAATCCCACAGCTGTCAAAT 781630 >seq50688 Length=207130 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| || | | | || Sbjct 76384 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGATTGAGGGC 76443 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 76444 GTGGGTTCAAATCCCACTTCTGACA 76468 >seq462937 Length=122802 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| || | | | ||| Sbjct 55256 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGATTGAGGGCG 55315 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 55316 TGGGTTCAAATCCCACTTCTGACA 55339 >seq328882 Length=56732 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 15732 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 15675 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 15674 GCGTGGGTTCAAATCCCACTTCTGACA 15648 >seq289246 Length=83462 Score = 82.4 bits (90), Expect = 8e-11 Identities = 82/105 (78%), Gaps = 6/105 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | | Sbjct 33790 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGGG 33847 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||||||||| || ||||| || ||| ||| ||| | ||| ||| Sbjct 33848 CGTGGGTTCAAATCCCACTTCTTACAGGTTAATATCGTAATCTTT 33892 >seq203205 Length=171204 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/93 (81%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 126258 TATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCT 126315 |||||| |||||| ||||||||||||||||||||||||| | ||| |||||| | | Sbjct 141705 TATTTA--GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTTGAT 141648 Query 126316 CGGGAGCGTGGGTTCGAACCCCACACCTGACAA 126348 | | |||||||||| || ||||| ||||||| Sbjct 141647 TGAGGGCGTGGGTTCAAATCCCACTTCTGACAA 141615 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/93 (81%), Gaps = 4/93 (4%) Strand=Plus/Plus Query 126258 TATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCT 126315 |||||| |||||| ||||||||||||||||||||||||| | ||| |||||| | | Sbjct 144801 TATTTA--GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTTGAT 144858 Query 126316 CGGGAGCGTGGGTTCGAACCCCACACCTGACAA 126348 | | |||||||||| || ||||| ||||||| Sbjct 144859 TGAGGGCGTGGGTTCAAATCCCACTTCTGACAA 144891 >seq162088 Length=512655 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 262695 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 262636 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||| || ||||| ||||||||| Sbjct 262635 TGGGTTCAAATCCCACTTCTGACAAAT 262609 >seq115137 Length=83871 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| || | | | ||| Sbjct 59213 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGATTGAGGGCG 59272 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 59273 TGGGTTCAAATCCCACTTCTGACA 59296 >seq91934 Length=402668 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| || | | | ||| Sbjct 364901 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCAATTGAGGGCG 364842 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 364841 TGGGTTCAAATCCCACTTCTGACA 364818 >seq23063 Length=443802 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| || | | | ||| Sbjct 383661 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGATTGAGGGCG 383720 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 383721 TGGGTTCAAATCCCACTTCTGACA 383744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 527256012526280