Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq9751 107 1e-18 seq12734 96.9 3e-15 seq595245 95.1 9e-15 seq23608 93.3 3e-14 seq1025 93.3 3e-14 seq68007 91.5 1e-13 seq74129 89.7 4e-13 seq5369 87.8 1e-12 seq43626 86.0 5e-12 seq562416 84.2 2e-11 seq8179 82.4 6e-11 >seq9751 Length=53254 Score = 107 bits (118), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 18/228 (8%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 ||||| ||||| ||||| || || ||||||||| ||||||||||| ||||| | | Sbjct 8822 AGCCGAAGCACAAGATGCAGGGTTGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCTC 8763 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||| || ||||| |||| | |||||||||| || | | ||| Sbjct 8762 CCATCTTCAAGTTGCTTCCCTGCAAAGATCAATCTCTGCTGATCCGGGGGAATTCCCTCC 8703 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAG-AT------TCGCA--T 34080 |||||| ||| | ||| ||||| ||||| ||| || || || | Sbjct 8702 TTGTCCTGAATCT---------TGGCCTTCACATTATCAATAGTATCCGAGCTCTCAACT 8652 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || | ||| || || || |||||||| ||||||||||||||||||||| Sbjct 8651 TCCAGCGTGATAGTCTTGCCGGTTAGGGTTTTCACAAAGATTTGCATT 8604 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| || || || || || ||||| || ||||||||| ||||||||||| || Sbjct 8603 CCGCCTCTGAGACGGAGGACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCA 8544 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || |||| ||||||||||| || ||||| |||| | |||||| || || Sbjct 8543 AGAGTG-CGTCCGTCCTCCAATTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTGG 8485 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAA---TGGAACTCACACTATCAGTAGATTC 34076 | | ||| |||||| || || ||||| || | | | | |||| |||| Sbjct 8484 AATCCCCTCCTTGTCCTGGATCTTGGCCTTAACATTGTCA---ATAGTGTCAG--AATTC 8430 Query 34077 GCA--TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || ||||| || ||||| || ||||| || || || |||||||| ||||| Sbjct 8429 TCAACTTCGAGGGTAATTGTCTTGCCGGTCAGGGTCTTGACAAAGATCTGCAT 8377 >seq12734 Length=494798 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/237 (70%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||| || || |||||||| |||||| |||||||| ||||||||||| ||| Sbjct 183263 CCACCCCTCAGACGGAGGACCAGATGCAGCGTGGATTCCTTCTGGATGTTGTAATCGGCC 183204 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| || || |||||||||||||| |||||||| || || Sbjct 183203 AGGGTACGGCCGTCTTCCAGCTGTTTTCCGGCAAATATCAGACGCTGCTGGTCAGGGGGA 183144 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGAT-TC 34076 | || || |||||| || || ||| | || | | | | |||| || | || Sbjct 183143 ATGCCTTCCTTGTCCTGGATCTTCGCCTTTACATTGTCA---ATAGTGTCAG-AGCTCTC 183088 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAA 34133 |||| || ||||| || ||||| || ||||| |||||||| ||||| || || Sbjct 183087 AACCTCGAGAGTGATTGTCTTGCCGGTAAGGGTTTTAACAAAGATCTGCATCTTGAA 183031 >seq595245 Length=51435 Score = 95.1 bits (104), Expect = 9e-15 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||||||||||||| ||||| || || | || || |||||||||||||||||| Sbjct 8690 CCACCTCTCAGCCGCAGCACAAGATGCAGGGTTGTTTCATTTTGAATGTTGTAATCTGCC 8631 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTG 34010 || ||| | || ||||| ||||| || | |||||| || | |||||| Sbjct 8630 AAGGTTCGGCCATCCTCCAACTGCTTACCAGAAAATATTAGCCTCTGCTG 8581 >seq23608 Length=1529151 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| || || || || || ||||| || |||||||| |||||||||||||| Sbjct 16927 CCCCCTCTTAGACGGAGAACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAATCTGCG 16868 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || |||| || | || || || ||||| ||||| | |||||| || || Sbjct 16867 AGAGTG-CGTCCGTCCTCGAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCGGGTGG 16809 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGC 34078 | | || ||||| |||||| ||||| | | | | |||| | || | || Sbjct 16808 AATCCCTTCCTTGTCTTGAATTTTAGCCTTAACGTTATCAATAGTATCTG-AGCTCTCAA 16750 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | ||| |||||||||||||| || ||||| |||||||| ||||| Sbjct 16749 CTTCAAGCGTGATTGTTTTTCCGGTCAGAGTTTTGACAAAGATCTGCAT 16701 >seq1025 Length=463399 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/112 (80%), Gaps = 4/112 (4%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||||||||||||| ||||| || || |||||||||||||||||||||||| Sbjct 115300 CCACCTCTCAGCCGCAGCACAAGATGCAGGGTTGATTCCTTCTGAATGTTGTAATCTGCC 115359 Query 33961 AATTGTC--GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTG 34010 || ||| || | || ||||| ||||| || | |||||| || | |||||| Sbjct 115360 AA-GGTCCAGC-CATCCTCCAACTGCTTACCAGAAAATATTAGCCTCTGCTG 115409 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||| || || || ||||| || ||| |||||||||||||||||||| ||| Sbjct 115528 CCGCCCCTCAGACGAAGGACGAGATGCAGTGTGGATTCCTTCTGAATGTTGTAATCAGCC 115587 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 |||| | | || ||||| ||||| |||||||| || || | |||||| || Sbjct 115588 AATTTCCTGCCATCCTCCAACTGCTTACCGGCAAAAATGAGCCTCTGCTGGTC 115640 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||||||| || || || || ||||| ||| |||||||| || ||||| || || Sbjct 116127 ACCACCTCTCAGACGAAGGACAAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGC 116186 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | ||| | || |||||||| || |||||||| || || ||||||||||| || Sbjct 116187 GAGTGTTCGACCATCTTCCAATTGTTTTCCGGCAAAGATAAGACGCTGCTGATCGGGGGG 116246 Query 34020 CACGCTCTCTTTGTC 34034 | || ||| ||||| Sbjct 116247 GATGCCCTCCTTGTC 116261 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/137 (75%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||| || || ||||||||||| || || |||||| ||||||||||| || ||| Sbjct 46420 CCTCCTCTTAGACGAAGCACCAGATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCC 46361 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| || | || |||| ||||| || ||||| || || | ||||||||| || Sbjct 46360 AA-GGTC-CTACCATCCTCCAGCTGCTTACCAGCAAAAATAAGCCTCTGCTGATCTGGCG 46303 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || || |||||| Sbjct 46302 GAATGCCTTCCTTGTCC 46286 >seq68007 Length=164494 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||||||||| || ||| ||||| || || |||||||||||||||||||||||| Sbjct 79277 CCACCTCTCAGCCACAACACAAGATGCAGGGTTGATTCCTTCTGAATGTTGTAATCTGCC 79218 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTG 34010 || ||| | || ||||| ||||| || | |||||| || | |||||| Sbjct 79217 AAGGTTCGACCATCCTCCAACTGCTTACCAGAAAATATTAGCCTCTGCTG 79168 >seq74129 Length=283392 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||||| || ||||| ||||| || || ||||||||||||||||| || || Sbjct 223895 ACCACCTCTCAAACGAAGCACAAGATGCAGGGTCGATTCCTTCTGAATGTTGTAGTCAGC 223836 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| ||| |||| ||||||||||| ||||| || || || | |||||| || Sbjct 223835 CAAAGTTCGACCGTCCTCCAATTGCTTACCGGCGAAAATAAGCCTCTGCTGGTC 223782 >seq5369 Length=633823 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| || ||||| || || ||||| ||| |||||||| || ||||| || ||| Sbjct 631402 CCACCTCTAAGGCGCAGGACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGCC 631461 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| ||| | || |||| |||||| || ||||| || || ||||||||||| Sbjct 631462 AATGTTCGACCATCTTCCAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATC 631514 >seq43626 Length=83058 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 33904 CCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAAT 33963 |||||||||||| |||| ||||| || || |||||||||||||||||||||||||| Sbjct 38560 CCTCTCAGCCGCGGCACAAGATGCAGGGTTGATTCCTTCTGAATGTTGTAATCTGCCAAG 38619 Query 33964 TGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || | || |||| ||||| || ||||| || || | |||||| || Sbjct 38620 GTCCGGCCATCCTCCAGCTGCTTACCAGCAAAGATTAGCCTCTGCTGGTC 38669 >seq562416 Length=95391 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||| || || || || || ||||| || |||||||| ||||||||||| || Sbjct 18746 CCTCCTCTGAGACGGAGAACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAATCGGCA 18687 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || |||| || | ||||| || ||||| ||||| | ||||||||| ||| Sbjct 18686 AGAGTG-CGTCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCGGGCGG 18628 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTC 34076 | | || |||||| |||||| ||| | || | | | | |||| ||| Sbjct 18627 AATCCCTTCCTTGTCCTGAATTTTAGCCTTGACATTGTCA---ATAGTGTCAGAGCTTTC 18571 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | ||| | || || || || || || || ||||| |||||||| |||||| Sbjct 18570 GACTTCCAGAGTGATAGTCTTGCCAGTAAGGGTTTTGACAAAGATCTGCATT 18519 >seq8179 Length=775255 Score = 82.4 bits (90), Expect = 6e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||| || || || || || ||||| || |||||||| ||||||||||| || Sbjct 377946 CCTCCTCTGAGACGGAGAACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAATCGGCA 377887 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || |||| |||| ||| || |||||||||||||| | |||||| || Sbjct 377886 AGAGTG-CGTCCGTCCTCCAGTTGTTTACCGGCAAATATCAGCCTCTGCTGGTC 377834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 376480821503794