Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq43890 96.9 4e-15 seq4935 95.1 1e-14 seq3954 89.7 6e-13 seq373077 87.8 2e-12 seq42192 87.8 2e-12 seq75769 86.0 7e-12 seq8144 86.0 7e-12 seq995 86.0 7e-12 seq367799 82.4 9e-11 seq1747 82.4 9e-11 >seq43890 Length=1259305 Score = 96.9 bits (106), Expect = 4e-15 Identities = 298/449 (66%), Gaps = 24/449 (5%) Strand=Plus/Minus Query 172577 TTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGAA 172636 ||||| || ||||||||||| |||| || | || | || | || || |||| |||| Sbjct 1102729 TTGAGTAGAGATGGCCAGAAAGAGTGTATGAAGTTGATCATAAATCCTTTTATGTATGAA 1102670 Query 172637 CCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATA--GCGAAGCTCGGAAACAT 172694 ||||| | |||| ||| |||||||||||||| | ||||| | || | || ||| Sbjct 1102669 CCATCATGATCCTGATCTGTCATAATCATAAGAGGGCCATATCTCTTAGATTTGACACA- 1102611 Query 172695 CTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAA-CTCTTGG 172753 | ||| ||||| || ||||| ||||| | ||| ||||||| || ||||| ||| Sbjct 1102610 -ATCATATTCCTTTCCATGTTGCAGACCAAGGATTTTCTTGATAT-GTTGAATCTCAACA 1102553 Query 172754 TTT-----GATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGA 172808 ||| || || || | || | || | | ||| | |||| || | || Sbjct 1102552 TTTTCCACTATCTGTGTATGG---TTG--GATTCCCTTAGATTCATCAACTTGCCTCTGA 1102498 Query 172809 GAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCT 172868 | || |||||||| || |||| |||||||| | || | || || | || |||| || Sbjct 1102497 GGGGAAACACACCCTAATGATTTCGACCAACAAAAGCCAACCCTGCCATCGCAAGGGCCT 1102438 Query 172869 TCGCGGAATCACCCTCCGTCACGATGAGCGTACACTT-TCCAGATTGTGCCGTCCCCGCC 172927 | || ||||| ||||| || | || || || || || || | ||| | | | || || Sbjct 1102437 TGGCTGAATCTCCCTCAGTTAAAATCAGAGTGCATTTCTCAAAATTCTTGC-TTCCTGCA 1102379 Query 172928 TTGTTCGCATCGTCCAACTTGGGAATACCAGT--AATTTTG-GACTTGCGGGCACCATCT 172984 | || |||| || | ||| | ||||| ||| || |||| ||| || ||||| Sbjct 1102378 TCATTTTCATCATCAAGCTTAGTAATACTAGTTAAACTTTGTCTCTT---GGTTCCATCA 1102322 Query 172985 GTCTTCTTGAGTTCCTTCATCTCCTTGAA 173013 || ||||| || ||||| ||| ||||| Sbjct 1102321 GTTTTCTTAAGATCCTTGCTCTGTTTGAA 1102293 >seq4935 Length=639826 Score = 95.1 bits (104), Expect = 1e-14 Identities = 212/312 (68%), Gaps = 6/312 (2%) Strand=Plus/Plus Query 172576 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGA 172635 |||||| || ||||||||||| |||| || | || | | | || || |||||||| Sbjct 354974 CTTGAGTAGAGATGGCCAGAAAGAGTGTATGAAGTTGATCAACAATCCTTTTATGTGTGA 355033 Query 172636 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATC 172695 |||||| | |||| ||| |||||||||||||| ||||||| | || ||| Sbjct 355034 ACCATCCTGATCCTGATCTGTCATAATCATAAGATGACCATATCTCAGAGATTTGACACT 355093 Query 172696 TTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGG-- 172753 || ||| ||||| || || || ||||| | ||| | ||||| || ||||| |||| | Sbjct 355094 TTCATATTCCTTTCCATGCTGCAGACCGAGGATTTGCTTGATAT-GTTGAA-TCTTAGCA 355151 Query 172754 TTTGATGTGAGTTGCGCCACTGA-AGCATCGCGGACATTTTTACACTTCCCACGGAGAGG 172812 ||| | | || | || || || | ||||| |||| || | ||| || Sbjct 355152 TTTTCCATTATCTG-TTTATGGATGGCTTCCCTTACATTCAACAACTTACCTCTGAGGGG 355210 Query 172813 GAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGC 172872 |||||||| || |||| |||||||| ||| | || || | ||| |||||||| | Sbjct 355211 AAACACACCATAATGATTTCGACCAACAACATCTAACCCTGCCAATGCAAGGGTCTTGGT 355270 Query 172873 GGAATCACCCTC 172884 ||||| ||||| Sbjct 355271 TGAATCTCCCTC 355282 >seq3954 Length=1091088 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/171 (72%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 172576 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGA 172635 |||||| || ||||||||||| |||| || | || | || | ||||| |||||||| Sbjct 43499 CTTGAGTAGAGATGGCCAGAAAGAGTGTATGAAGTTGATCATCAATCCCTTTATGTGTGA 43558 Query 172636 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATC 172695 |||||| | ||| | | ||||||||||||| ||||||| | || |||| Sbjct 43559 ACCATCATGATCTTGACCTATCATAATCATAAGATGACCATATCTCAGAGATTTAACACT 43618 Query 172696 TTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAA 172746 | ||| ||||| || || || ||||| | ||| ||||||| || |||||| Sbjct 43619 GTCATATTCCTTTCCATGCTGCAGACCAATGATTTTCTTGATAT-ATTGAA 43668 >seq373077 Length=96335 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/179 (72%), Gaps = 8/179 (4%) Strand=Plus/Plus Query 172576 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGA 172635 |||||| || ||||||||||| |||| || | || | | | || || |||||||| Sbjct 3407 CTTGAGTAGAGATGGCCAGAAAGAGTGTATGAGGTTGATCAAAAATCCTTTTATGTGTGA 3466 Query 172636 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGC---GAAGCTCGGAAAC 172692 |||||| | |||| ||| |||||||||||||| ||||||| | || | | | || Sbjct 3467 ACCATCCTGATCCTGATCTGTCATAATCATAAGATGACCATATCTCAGAGGTTTG---AC 3523 Query 172693 ATCTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTT 172751 | || ||| ||||| || || || ||||| | ||| | ||||| || ||||| |||| Sbjct 3524 ACTTTCATATTCCTTTCCATGCTGCAGACCAAGGATTTGCTTGATAT-GTTGAA-TCTT 3580 >seq42192 Length=152393 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 172577 TTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGAA 172636 ||||| || ||||||||||| |||| || | || | | | || || ||||||||| Sbjct 5235 TTGAGTAGAGATGGCCAGAAAGAGTGTATGAAGTTAATCAACAATCCTTTTATGTGTGAA 5176 Query 172637 CCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATCT 172696 ||||| | |||| ||| |||||||||||||| ||||||| | || | ||| Sbjct 5175 CCATCATGATCCTGATCTGTCATAATCATAAGATGACCATATCTCAGATATTTGACACTG 5116 Query 172697 TGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGAT 172739 | ||| ||||| || || || ||||| | ||| ||||||| || Sbjct 5115 TCATATTCCTTTCCATGCTGCAGACCAAGGATTTTCTTGATAT 5073 >seq75769 Length=615024 Score = 86.0 bits (94), Expect = 7e-12 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 172576 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGA---CCCTTAATGTG 172632 |||||| || ||||||||||| |||| || | || ||| ||| || || ||||| Sbjct 166746 CTTGAGTAGAGATGGCCAGAAAGAGTGTATGAAGTT---GATCAGAAATCCTTTTATGTG 166690 Query 172633 TGAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAAC 172692 ||||||||| | |||| | | |||||||| ||||| ||||||| | || | || Sbjct 166689 TGAACCATCATGATCCTGAACTGTCATAATAATAAGATGACCATATCTCAGATATTTGAC 166630 Query 172693 ATCTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGAT 172739 | | ||| ||||| || | ||||||||| | ||| ||||||| || Sbjct 166629 ACTGTCATATTCCTTTCCATATTGAAGACCAAGGATTTTCTTGATAT 166583 >seq8144 Length=769616 Score = 86.0 bits (94), Expect = 7e-12 Identities = 252/382 (66%), Gaps = 10/382 (3%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 ||||||| || | |||||| || || || || | || || || || | ||| Sbjct 578385 ACGGTGACCTGCCTATCAAACCGGCCCGGCCGCAACAGCGCTGAATCCAGAACATCCGGC 578444 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG---CCATCCATCTCA 10891 || |||||||| || | |||| | |||| || ||| || || || |||||||| Sbjct 578445 CGATTCGTCGCTGCAAGAACAATAAC-CCCG-CT-GTTCCCAGAGAACCCGTCCATCTCC 578501 Query 10892 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGCATACCACCCGCAC 10949 ||||| || |||||||| || ||||| | ||||||||| ||| | || || | || | Sbjct 578502 GTCAACAGCTGATTGATTGTCTGTTCCCTTTCATCATTACCGCCGCCAAGCC--CGGCCC 578559 Query 10950 TGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCAC 11009 | |||| | || || ||||||||||||||||| || ||||| || || || | Sbjct 578560 CCCTTTGCCTCCCTACTGCGTCAATTTCATCGATAAAGACGATGCAGGGCGCCTTGGCCT 578619 Query 11010 GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAA 11069 ||| || || | || || || | ||||| ||||| || || | || || | Sbjct 578620 TGGCCTTCTCGAACAGGTCCCGTACCCGGGACGCACCTACACCGACGAAGAGCTCGACGA 578679 Query 11070 AATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGA 11129 | | | || | ||| | |||||| || || || || | || || ||||| | Sbjct 578680 ACTCCGACGCCGCACAGGAAAAGAAGGGAACCCCGGCCTCTCCTGAGACTGCCCGGGCCA 578739 Query 11130 GGAGGGTCTTCCCCGTCCCAGG 11151 | || |||||||||||||| || Sbjct 578740 GTAGAGTCTTCCCCGTCCCTGG 578761 >seq995 Length=674264 Score = 86.0 bits (94), Expect = 7e-12 Identities = 256/386 (66%), Gaps = 12/386 (3%) Strand=Plus/Plus Query 172576 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGA---CCCTTAATGTG 172632 |||||| || ||||||||||| |||| || | || ||| ||| || || ||||| Sbjct 495742 CTTGAGTAGAGATGGCCAGAAAGAGTGTATGAAGTT---GATCAGAAATCCTTTTATGTG 495798 Query 172633 TGAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAAC 172692 ||||||||| | |||| ||| ||| |||||||||| ||||||| | || | || Sbjct 495799 TGAACCATCATGATCCTGATCTGTCCTAATCATAAGATGACCATATCTTAGATATTTGAC 495858 Query 172693 ATCTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAA-CTCTT 172751 | | ||| ||||| || ||||| ||||| | ||| | |||| || ||||| ||| | Sbjct 495859 ACTGTCATATTCCTTTCCATGTTGCAGACCAAGGATTTGTTTGATAT-GTTGAATCTCAT 495917 Query 172752 GGTTTGATGTGAGTTGCGCCACTGA-AGCATCGCGGACATTTTTACACTTCCCACGGAGA 172810 ||| | | || | || || || | ||||| | |||| | | ||| Sbjct 495918 CATTTTCCATTATCTG-TTTATGGATGGCTTCCCTTACATTCGGAAACTTAGCTCTGAGG 495976 Query 172811 GGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTC 172870 || |||||||| || |||| |||||||| ||| | | || | ||| |||||||| Sbjct 495977 GGAAACACACCATAATGATTTCGACCAACAACAACCAACTCTGCCATTGCAAGGGTCTTG 496036 Query 172871 GCGGAATCACCCTCCGTCACGATGAGCGTACACTT-TCCAGATTGTGCCGTCCCCGCCTT 172929 | ||||| || || | | || || || || || || | ||| | | | || || | Sbjct 496037 GATGAATCTCCATCAGCTAAAATCAGAGTGCATTTCTCAAAATTCTTGC-TTCCTGCATC 496095 Query 172930 GTTCGCATCGTCCAACTTGGGAATAC 172955 || ||||| || | ||||| |||| Sbjct 496096 ATTTGCATCATCAAGCTTGGTGATAC 496121 >seq367799 Length=34844 Score = 82.4 bits (90), Expect = 9e-11 Identities = 123/168 (73%), Gaps = 10/168 (6%) Strand=Plus/Minus Query 172577 TTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGAT-GAGA--CCCTTAATGTGT 172633 ||||| || ||||||||||| |||| || | | || ||| || | || || |||||| Sbjct 8476 TTGAGTAGAGATGGCCAGAAAGAGTGTATGA-AGTC--GATCGAAAATCCTTTTATGTGT 8420 Query 172634 GAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATA--GCGAAGCTCGGAAA 172691 |||||||| | ||| ||| ||||||||||||| ||||||| | ||| | | | Sbjct 8419 GAACCATCATGATCTTGATCTTTCATAATCATAAGATGACCATATCTCAAAGAT--GTGA 8362 Query 172692 CATCTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGAT 172739 || || ||| ||||| || || || ||||| ||||| ||||||| || Sbjct 8361 CACTTTCATATTCCTTTCCATGCTGTAGACCAAAGATTTTCTTGATAT 8314 >seq1747 Length=1080757 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/163 (72%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 172576 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGA 172635 || ||| || ||||||||||| |||| || | || | | | || || |||||||| Sbjct 199578 CTCGAGTAGAGATGGCCAGAAAGAGTGTATGAAGTTGATCAGCAATCCTTTTATGTGTGA 199637 Query 172636 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATA--GCGAAGCTCGGAAACA 172693 |||||| | |||| ||| |||||||||||||| ||||||| | ||| | | ||| Sbjct 199638 ACCATCATGATCCTGATCTGTCATAATCATAAGATGACCATATCTCAAAGATTTG--ACA 199695 Query 172694 TCTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGA 172736 | | ||| ||||| || || || ||||| | ||| | ||||| Sbjct 199696 TTGTCATATTCCTTTCCATGCTGCAGACCAAGGATTTGCTTGA 199738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565596064948760