Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3954 84.2 3e-11 seq373077 82.4 9e-11 >seq3954 Length=1091088 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/171 (71%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 176596 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 176655 |||||| || ||||||||||| |||| || | |||| || | ||||| |||||||| Sbjct 43499 CTTGAGTAGAGATGGCCAGAAAGAGTGTATGAAGTTGATCATCAATCCCTTTATGTGTGA 43558 Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAGCTCGGAAACATC 176715 |||||| | ||| | | |||||||||| || ||||||| | || |||| Sbjct 43559 ACCATCATGATCTTGACCTATCATAATCATAAGATGACCATATCTCAGAGATTTAACACT 43618 Query 176716 TTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAA 176766 | ||| ||||| || || || ||||| | || ||||||| || |||||| Sbjct 43619 GTCATATTCCTTTCCATGCTGCAGACCAATGATTTTCTTGATAT-ATTGAA 43668 >seq373077 Length=96335 Score = 82.4 bits (90), Expect = 9e-11 Identities = 128/179 (72%), Gaps = 8/179 (4%) Strand=Plus/Plus Query 176596 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 176655 |||||| || ||||||||||| |||| || | |||| | | || || |||||||| Sbjct 3407 CTTGAGTAGAGATGGCCAGAAAGAGTGTATGAGGTTGATCAAAAATCCTTTTATGTGTGA 3466 Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGC---GAAGCTCGGAAAC 176712 |||||| | |||| ||| ||||||||||| || ||||||| | || | | | || Sbjct 3467 ACCATCCTGATCCTGATCTGTCATAATCATAAGATGACCATATCTCAGAGGTTTG---AC 3523 Query 176713 ATCTTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTT 176771 | || ||| ||||| || || || ||||| | || | ||||| || ||||| |||| Sbjct 3524 ACTTTCATATTCCTTTCCATGCTGCAGACCAAGGATTTGCTTGATAT-GTTGAA-TCTT 3580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580890879602520