Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq8144 93.3 5e-14 seq4184996 91.5 2e-13 seq96513 89.7 6e-13 >seq8144 Length=769616 Score = 93.3 bits (102), Expect = 5e-14 Identities = 272/412 (66%), Gaps = 18/412 (4%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || || || || | ||||| ||| || | ||| |||||||| || || Sbjct 578399 ATCAAACCGGCCCGGCCGCAACAGCGCTGAATCCAGAACATCCGGCCGATTCGTCGCTGC 578458 Query 15947 GATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 | |||| || || |||| | | || || |||||||| ||||| ||||| || Sbjct 578459 AAGAACAATAACCCCGCTGTTCCCAGAG--AACCCGTCCATCTCCGTCAACAGCTGATTG 578516 Query 16005 ATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 16062 || || ||||||| ||||||||| ||| | || || | || | | |||| | || | Sbjct 578517 ATTGTCTGTTCCCTTTCATCATTACCGCCGCCAAGCC--CGGCCCCCCTTTGCCTCCCTA 578574 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTTCA 16118 | || ||||| ||||| || ||||||||||| || ||| || || | || Sbjct 578575 CTGCGTCAATTTCATCGATAAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----TCG 578630 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || || |||||||| || || || ||||| || || | ||| || || | | || Sbjct 578631 AACAGGTCCCGTACCCGGGACGCACCTACACCGACGAAGAGCTCGACGAACTCCGACGCC 578690 Query 16179 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 | ||| | |||||| || | || || | | || ||||| || |||||||| Sbjct 578691 GCACAGGAAAAGAAGGGAACCCCGGCCTCTCCTGAGACTGCCCGGGCCAGTAGAGTCTTC 578750 Query 16239 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCCA 16289 ||||| |||||| ||| | || | ||| | | | || |||||||| ||| Sbjct 578751 CCCGTCCCTGGCGGACCGACCAGTA-AGCATCCCTTGGGGATCTTGGCACCA 578801 >seq4184996 Length=520 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 163546 CTATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACACGGTATCCAAGTTGGTGC 163605 ||| || ||| |||||||| | || || || || |||||| ||||||||||| ||||| Sbjct 258 CTACGGTCGTATTGCGCCAAGGTCAGGCCTGGCAGTGAAAAACGGTATCCAAACCGGTGC 317 Query 163606 GGGTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCAT 163660 |||||| | || || ||||| |||||||| ||||| ||| | ||||||||| Sbjct 318 TGGTGTTGTCGACAGAGATTACACCGGTGAAGTTAAAGTAGTTTTATTCAATCAT 372 >seq96513 Length=125968 Score = 89.7 bits (98), Expect = 6e-13 Identities = 190/277 (69%), Gaps = 10/277 (4%) Strand=Plus/Minus Query 15897 CCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACA 15956 || || ||||| | || |||| || | |||||| ||||| || || || ||||||| Sbjct 98914 CCAGGCCGAAGTAAAGCCGCATCCAGCACATCAACTCGATTGGTGGCTGCAATGACAATC 98855 Query 15957 ATACCTGT-TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTC 16015 | || || ||| | ||||| ||||||||||| || | | ||||| | || ||||| Sbjct 98854 ACTCCAGTGTTCCCT-TCAAATCCATCCATCTCAGTAAGCAATTGGTTCAATGTCTGTTC 98796 Query 16016 CCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAAT 16072 ||||||||||| || |||| || || | | ||| ||||||| ||||||| Sbjct 98795 TCGTTCATCATTGCCT---CCACCAATTCCTGCTCCCCTCTGCCTTCCCACTGCATCAAG 98739 Query 16073 CTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTA 16131 ||||| ||||| | || || || |||||| | | ||| ||| ||||| || | Sbjct 98738 TTCATCTATGAAAATAATACAAGGCGCATTTTCCTTTGCCCTCTTGAAA-AGATCACGAA 98680 Query 16132 CACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168 | | ||| || || || ||||||||||| | ||| Sbjct 98679 CCCTAGAGGCTCCTACTCCTACAAACATCTCTATAAA 98643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587741429509840