Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq8144 122 1e-22 seq110155 93.3 5e-14 seq16153 82.4 9e-11 >seq8144 Length=769616 Score = 122 bits (134), Expect = 1e-22 Identities = 256/379 (68%), Gaps = 2/379 (1%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGG- 11650 ||| |||||||| || || | ||||| ||||| |||||||| | ||||| || | Sbjct 578486 GAACCCGTCCATCTCCGTCAACAGCTGATTGATTGTCTGTTCCCTTTCATCATTACCGCC 578545 Query 11651 GCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATAC 11710 || | | || ||| | | | | || || |||||||| |||||||| || ||||| | Sbjct 578546 GCCAAGC-CCGGCCCCCCTTTGCCTCCCTACTGCGTCAATTTCATCGATAAAGACGATGC 578604 Query 11711 ACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTA 11770 | || ||||| |||| ||||| || || ||||| || ||| || ||||| | Sbjct 578605 AGGGCGCCTTGGCCTTGGCCTTCTCGAACAGGTCCCGTACCCGGGACGCACCTACACCGA 578664 Query 11771 CGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAG 11830 |||| | ||| ||||| | | || | ||| || ||||||||| | ||| || | Sbjct 578665 CGAAGAGCTCGACGAACTCCGACGCCGCACAGGAAAAGAAGGGAACCCCGGCCTCTCCTG 578724 Query 11831 CGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCAC 11890 || || || || || |||||||| ||||| || || | ||| | || | | || Sbjct 578725 AGACTGCCCGGGCCAGTAGAGTCTTCCCCGTCCCTGGCGGACCGACCAGTAAGCATCCCT 578784 Query 11891 GGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCT 11950 |||||||||||||||| || || ||||| || || | ||| ||||| | || Sbjct 578785 TGGGGATCTTGGCACCAAGGGCAGTATACTTATCAGGGTTTTTCAAGAAATCCACCACCT 578844 Query 11951 CCTCAAGTTCCTCCTTGGC 11969 ||| ||| ||| |||||| Sbjct 578845 CCTGAAGCTCCAACTTGGC 578863 >seq110155 Length=334074 Score = 93.3 bits (102), Expect = 5e-14 Identities = 256/387 (66%), Gaps = 14/387 (4%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 ||||| ||||| || ||||| | | |||| ||||||| ||||| | | ||| || || Sbjct 43618 CGATCAAAACGCCCCGGGCGCAACAAAGCAGCATCAAGTATATCAGCCCTGTTGGTTGCA 43677 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 ||||| || | || ||||| | || || || |||||||| ||||||||||| || Sbjct 43678 GCAATCACAATGATACCAGTGTTCCCTTCAAAGCCATCCATTTCGGTGAGAAGCTGATTC 43737 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCT-GCCGAACGCTTCT-----TA 11676 | || ||||| |||||||| || | | |||||| | | | ||| || Sbjct 43738 AGGGTTTGTTCTCGCTCATCATT-----TCCT-CCACCTATTCCAGTTCCTCTCTGTCTA 43791 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 || || || ||||| ||||| | || || || || || || | |||| || | Sbjct 43792 CCAACTGCATCAATTTCATCAACAAAAACAATGCAAGGGGCATTTTCCTTGGCCTTTTTG 43851 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 || || ||||| || | ||||||| ||| || |||||||| || || | | | Sbjct 43852 AACAGGTCACGCACTCTAGATGCTCCAATACCAACAAACATCTCCACAAACTCAGACCCT 43911 Query 11797 GA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 || | | ||| |||||| ||| || || || || ||||| || || | |||||| Sbjct 43912 GAGATAGAGAA-GAAGGGTACACCAGCTTCCCCTGCAATGGCCTTGGCTAGCAAAGTCTT 43970 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAG 11882 || || || |||| ||| | ||||| Sbjct 43971 CCCAGTCCCTGGTGGACCCACAAGAAG 43997 >seq16153 Length=80228 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/96 (80%), Gaps = 8/96 (8%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGT----CCAGGCATGAG 119563 || || |||||||||| || ||||||||||| ||| ||||| |||||||| || Sbjct 45613 TGGAGGCCTTCATCCCTTGAAATGAGCTCATTG--GAA--AAAGTTAGACCAGGCATCAG 45558 Query 119564 TCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACT 119599 || |||||||| ||||||||||| ||||||||||| Sbjct 45557 GCCCCTTTTCTTCAGCCAAAAGATTGCACAAAAACT 45522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557663849266600