Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq56275 109 2e-18 seq110155 107 5e-18 seq4252339 96.9 1e-14 seq34750 93.3 1e-13 seq75873 86.0 2e-11 seq38403 86.0 2e-11 seq19246 86.0 2e-11 seq3028 86.0 2e-11 seq570714 84.2 6e-11 >seq56275 Length=114807 Score = 109 bits (120), Expect = 2e-18 Identities = 177/253 (70%), Gaps = 9/253 (4%) Strand=Plus/Minus Query 156046 AACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || |||| || || ||||| || ||||||||||| |||||||| | ||| || |||| Sbjct 26248 AATTACCCTTTCTTTTGCCTCCTCCTTGATCTACATAGCGAGCAGTATCATTAAACACAC 26189 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCA---G 156159 | ||| || | ||||||||| || |||||||| ||||| || || | ||| | | Sbjct 26188 GCAACATTGGCACAATACCATTTGATGTGCCATTTGTTCCACGTATGT---AACTATTTG 26132 Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219 ||| |||| |||||| || | |||||| || |||| |||| ||| ||| | Sbjct 26131 TTGAACGAATATTATGGATCGAAACTCCAATGCCTCCTGCTGATTTGCTAATCACAGCAC 26072 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 |||| || | |||| ||||||||||||| |||||| | ||| | | ||| ||| Sbjct 26071 ATTCTTTGAGGGTATCATAAATACCTTCAATGCTATCATCCTTCATACAGATAAGAAAGC 26012 Query 156280 ACGAACTTAATTG 156292 | |||||| || Sbjct 26011 AGCTACTTAACTG 25999 >seq110155 Length=334074 Score = 107 bits (118), Expect = 5e-18 Identities = 313/472 (66%), Gaps = 20/472 (4%) Strand=Plus/Plus Query 288888 TATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCA 288945 |||||| || ||||| ||||| || | |||| ||| | | ||| ||| ||| ||| Sbjct 43656 TATATCAGCCCTGTTGGTTGCAGCAATCACAATGATACCAGT--GTTCCCTTCAAAGCCA 43713 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| || | || ||||| || |||||||| | ||||||||| |||| Sbjct 43714 TCCATTTCGGTGAGAAGCTGATTCAGGGTTTGTTCTCGCTCATCATTT---CCTC----- 43765 Query 289006 TCACCCGAATC--GCTCCttttttt--ACCAACAGCATCAATTTCGTCAATGAAAATCAC 289061 |||| | || | |||| | | | |||||| ||||||||||| |||| |||| | Sbjct 43766 -CACCT-ATTCCAGTTCCTCTCTGTCTACCAACTGCATCAATTTCATCAACAAAAACAAT 43823 Query 289062 ACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACC 289121 || || | ||||| | || || || | || | || | |||||||||| ||| Sbjct 43824 GCAAGGGGCATTTTCCTTGGCCTTTTTGAACAGGTCACGCACTCTAGATGCTCCAATACC 43883 Query 289122 AACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGC 289180 |||| |||| || ||||| ||||| | || | | || | ||| | |||| ||||| | Sbjct 43884 AACAAACATCTCCACAAACTCAGACCCTGAGA-TAGAGAAGAAGGGTACACCAGCTTCCC 43942 Query 289181 CTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTC 289240 |||| | ||| | || || | ||||| || || || ||||| ||| | | ||||||| Sbjct 43943 CTGCAATGGCCTTGGCTAGCAAAGTCTTCCCAGTCCCTGGTGGACCCACAAGAAGAACTC 44002 Query 289241 CCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAA 289300 | || || | || ||| | | || | |||| || | |||| || || || | Sbjct 44003 CTTTAGGAATACGAGCTCCAACCGCAGTAAACCTCTCTGGTTTTTTTAGGAACTCAACCA 44062 Query 289301 TTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 |||| | || | |||||||||||| ||||| || ||| |||| || Sbjct 44063 CTTCCATGAAATCCTGCTTTGCCTCATCAACACCTGCCACGTCATCAAATGT 44114 >seq4252339 Length=9792 Score = 96.9 bits (106), Expect = 1e-14 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || |||||||| | | ||| |||||||| || || |||||| | ||| ||||| Sbjct 9566 GCAATTAGACCACAGTGCTCACAAACATGGACCCTATATGCATCACTTTGATCAAATAGC 9625 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | | || ||| ||| || || || | |||||||||||||| |||||||| || Sbjct 9626 CTTTCTTTCAGGAAATGAGCAGCTCCATGGGCTATCATACAATCACGTTCCATTTCTCCA 9685 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGA 251574 ||||| ||||| ||||| |||| | || || || || || ||||||||| Sbjct 9686 AAACGTAGACCTCCATCACGAGAACGTCCTTCTGCCGGTTGTCGAGTGAGA 9736 >seq34750 Length=222008 Score = 93.3 bits (102), Expect = 1e-13 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || |||||||| | ||| |||||||| || || |||||| | |||| ||||| Sbjct 57167 GCAATTAGACCACAGCGTTCACAAACATGGACCCTATATGCATCACTTTGGTCAAATAGC 57108 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | | || ||| ||| || || || | |||||||||||||| ||||| || || Sbjct 57107 CTTTCTTTCAAGAAATGAGCAGCTCCATGGGCTATCATACAATCACGTTCCATCTCTCCA 57048 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGA 251574 ||||| ||||| ||||| |||| | || || || || || ||||||||| Sbjct 57047 AAACGTAGACCTCCATCACGAGAACGTCCTTCTGCTGGTTGTCGAGTGAGA 56997 >seq75873 Length=1623204 Score = 86.0 bits (94), Expect = 2e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || ||||| |||| ||| |||||||| || | | || | | || || || | || Sbjct 366214 CCCACAGCGTCAAGTTCATCAATGAATATGATTGATGGTGCACATTTCCTGGCCACCTCA 366273 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | ||||| | |||| ||||| || ||| ||| |||||||||||| ||| Sbjct 366274 AAAAGATCTCTGATTCGGGCAGCTCCTCTTCCTACAAACAACTCTACAAATTCACTAGCA 366333 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || || || ||| | || ||| || || |||||||| | ||||||||||| || Sbjct 366334 GAGGCTGCAAAGAAAGGAACTCCTGCCTCTCCAGCTACTGCACGTGCCAGAAGTGTTTTG 366393 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 || ||||| || ||||| | || || |||||||||| ||||| || Sbjct 366394 CCCGTTCCTGGAGGTCCTAACAGGAGTACACCCTTTGGTAGCTTTGCTCC 366443 >seq38403 Length=1032131 Score = 86.0 bits (94), Expect = 2e-11 Identities = 172/253 (68%), Gaps = 9/253 (4%) Strand=Plus/Minus Query 156046 AACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || |||| || || ||||| || ||||||||||| ||||||| | ||| || ||| Sbjct 534404 AATTACCCTTTCTTTTGCCTCCTCCTTGATCTACATAGTGAGCAGTATCATTAAACACAG 534345 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCA---G 156159 | ||| | | ||| ||||| || |||||||| ||||| || || | ||| | | Sbjct 534344 GGAACATTAGCACAATGCCATTTGATGTGCCATTTGTTCCACGTATGT---AACTAATTG 534288 Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219 ||| |||| |||||| || | |||||| || |||| |||| ||| | | | Sbjct 534287 TTGAACGAATATTATGGATCGAAACTCCAATGCCTCCTGCTGATTTTCTAATGAAAACAC 534228 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 |||| || | |||| |||||||||||| | |||||| | || ||| ||| || Sbjct 534227 ATTCTTTGAGGGTATCATAAATACCTTCAACAATATCATCCTTAATACATATAAGAAAGA 534168 Query 156280 ACGAACTTAATTG 156292 | ||||||||| Sbjct 534167 AGCTACTTAATTG 534155 >seq19246 Length=439232 Score = 86.0 bits (94), Expect = 2e-11 Identities = 153/223 (69%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 156046 AACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || |||| || || ||||| || |||| |||||| |||||| | | ||| || |||| Sbjct 410767 AATTACCCTTTCTTTTGCCTCCTCCTTGATATACATAGCGAGCAATATCATTAAACACAC 410826 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 | ||| || | ||| ||||| || || ||||| ||||| || || | | | || Sbjct 410827 ACAACATTGGCACAATGCCATTTGATGTTCCATTTGTTCCACGTATGTATCTATTTGTTG 410886 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 | |||| |||||| || | |||||| || |||| |||| ||| | | |||| Sbjct 410887 AACGAATATTATGGATCGAAACTCCAATGCCTCCTGCTGATTTTCTAATCACATCACATT 410946 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | || | ||||| ||||||||||||| |||||| | ||| Sbjct 410947 CTTTAAGAGTATCATAAATACCTTCAATGCTATCATCCTTCAT 410989 >seq3028 Length=508140 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/137 (75%), Gaps = 5/137 (4%) Strand=Plus/Minus Query 301831 GGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAGA 301890 || |||||| |||| || || ||||| ||||||||| | |||||||||||||| Sbjct 279502 GGGACACCAAGGGTAACATT---CTTGGCACTGACACCAGCATAATGGAAAGTATTCAGT 279446 Query 301891 GTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATA-CCAACCATTTCTCC 301949 || | ||||||| |||||||||||| ||||| |||| || | |||| ||| || || Sbjct 279445 GTCATCTGAGTAGCTGGCTCACCAATGGACTGTGCTGCAA-CACAGCCAATCATCTCACC 279387 Query 301950 TGGTGCTACAATAGACT 301966 ||| ||||| | |||| Sbjct 279386 TGGAGCTACTAAGGACT 279370 >seq570714 Length=178535 Score = 84.2 bits (92), Expect = 6e-11 Identities = 172/253 (68%), Gaps = 11/253 (4%) Strand=Plus/Plus Query 156046 AACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || |||| || || ||||| || |||| |||||| ||||| || | ||| || |||| Sbjct 58054 AATTACCCTTTCTTTTGCCTCCTCCTTGATATACATAGCGAGCGGTATCATTAAACACAC 58113 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT- 156161 | ||| || | ||| ||||| || |||||||| ||||| || || | ||| | | Sbjct 58114 --AACATTGGCACAATGCCATTTGATGTGCCATTTGTTCCACGTATGT---AACTATTTT 58168 Query 156162 --GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219 || |||| |||||| || | |||||| || |||| |||| ||| | | | Sbjct 58169 TTGAACGAATATTATGGATCGAAACTCCAATGCCTCCTGCTGATTTTCTAATCACATCAC 58228 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 |||| || | |||| ||||||||||||| |||||| | ||| | | ||| ||| Sbjct 58229 ATTCTTTAAGGGTATCATAAATACCTTCAATGCTATCATCCTTCATACAGATAAGAAAGC 58288 Query 156280 ACGAACTTAATTG 156292 | || |||||| Sbjct 58289 AGCTACCTAATTG 58301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1391614130067689