Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq193309 93.3 6e-13 seq87483 89.7 8e-12 seq258795 87.8 3e-11 >seq193309 Length=147755 Score = 93.3 bits (102), Expect = 6e-13 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||||||| |||||||| ||||||||||||||||| |||| || || || | | | Sbjct 42079 TTGGTGACAGCCTTGGTGCCCTCTGAGACGGCGTGTTTGGCGAGCTCCCCTGGTAGGGCA 42020 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 || | || || ||||| |||||||| | | ||| ||| ||||||| ||| || Sbjct 42019 AGTCTTACAGCAGTCTGAATCTCGCGAGAGGTGATAGTGGGCTTCTTGTTATAGCGGGCG 41960 Query 1485595 AGGCGGCCGGCCTCG-GTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAT 1485653 || |||||| |||| || || | || || |||| ||| ||||||||| Sbjct 41959 AGTTTCGATGCCTCGCTTGCCAAT-TTCTCAAAAATATCATTGATAAAGCTGTTCATGAT 41901 Query 1485654 CGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| | || |||| || || | ||| ||||| ||||||||||| |||||| Sbjct 41900 TCCCATGGCCTTACTGGAAATACCAATGTCAGGGTGTACCTGCTTGAGAACCTTG 41846 >seq87483 Length=281425 Score = 89.7 bits (98), Expect = 8e-12 Identities = 164/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||| || || |||||||| ||||| || || |||||| |||||| ||| ||| | | | Sbjct 94974 ACTTAGTAACAGCCTTGGTGCCCTCGGATACCGCGTGCTTGGCCAATTCCCCGGGAAAAA 94915 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGG---TGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | | || ||||| ||||| | || | | ||| ||| | || | ||| Sbjct 94914 TGAGCCTGGCCGCAGTCTGAATCTCCCTGGAAGTAACCGTCGGCTTGTGGTTATAAGTT- 94856 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 || ||||||| |||||| | ||| || | ||||| ||||| ||||| |||| Sbjct 94855 --GCAAGGCGGCAGGCCTCTGCTGCGAGTTTTTCAAAGATGTCATTGACGAACGAATTCA 94798 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||| ||||| ||| || || || |||||| ||||||||||| | |||||| Sbjct 94797 TGATGCCCATCGCCTTGGAAGATATTCCGGTGTCGGGATGCACCTGCTTCAAGACCTTG 94739 >seq258795 Length=76973 Score = 87.8 bits (96), Expect = 3e-11 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||| || |||||||| ||||||||||||||||| |||| || || || | | | Sbjct 53593 TTGGTCACAGCCTTGGTGCCCTCTGAGACGGCGTGTTTGGCGAGCTCCCCTGGAAGGGCA 53652 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 || | || || ||||| |||||||| | | ||||||| ||||||| ||| || Sbjct 53653 AGTCTTACAGCAGTCTGAATCTCGCGAGAGGTGATCGTGGGCTTCTTGTTATAGCGGGCG 53712 Query 1485595 AGGCGGCCGGCCTCG-GTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAT 1485653 || |||||| |||| || || | || || |||| ||| ||||||||| Sbjct 53713 AGTTTCGATGCCTCGCTTGCCAAT-TTCTCAAATATATCATTGATAAAGCTGTTCATGAT 53771 Query 1485654 CGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| | || |||| || || | || ||||| ||||||||||| |||||| Sbjct 53772 TCCCATGGCCTTACTGGAAATACCAATATCAGGGTGTACCTGCTTGAGAACCTTG 53826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7463825073734583