Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq562416 93.3 6e-14 seq8179 93.3 6e-14 seq23608 91.5 2e-13 seq99438 89.7 8e-13 seq5369 87.8 3e-12 seq190644 86.0 9e-12 seq1025 84.2 3e-11 >seq562416 Length=95391 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||| ||||| | || ||||| || |||||||| || ||| | || || || | | | Sbjct 18293 TGCAGATATTTGTGAAGACATTGACCGGAAAAACCATAACTCTCGAGGTCGAGAGCTCA- 18351 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| | |||||||| || || || || || || ||||| || |||||| Sbjct 18352 GACACTATTGATAATGTAAAGGCGAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAA 18411 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || ||||||||||| || ||||| | || ||| |||| | |||||||||| Sbjct 18412 CAGAGGCTCATTTTTGCTGGCAAACAGCTTGAGGATGGCCGAACCCTCGCAGATTATAAC 18471 Query 146211 ATACAAAAAGAATCGACT 146228 || || || ||||| ||| Sbjct 18472 ATTCAGAAGGAATCCACT 18489 Score = 93.3 bits (102), Expect = 6e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || || ||||| || || || ||| | || || || | Sbjct 53960 TGCAGATATTTGTGAAGACGTTGACAGGCAAGACCATCACTCTGGAGGTTGAGAGCTCTG 54019 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| |||||| ||| ||| ||||| ||||| || ||||| | Sbjct 54020 ATACGATTGATAATGTCAAAGCTAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAGC 54079 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||||||||| || || ||||| || ||| |||| | | |||||||| Sbjct 54080 AGAGGCTCATTTTTGCTGGCAAGCAATTGGAGGATGGCCGAACCCTGGCCGATTATAACG 54139 Query 146212 TACAAAAAGAATCGAC 146227 | || || ||||| || Sbjct 54140 TTCAGAAGGAATCCAC 54155 >seq8179 Length=775255 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||| |||||| | || ||||| || ||||| || || ||| |||| || || | | | Sbjct 377493 TGCAGATATTCGTGAAGACATTGACCGGAAAGACCATAACTCTTGAGGTGGAGAGCTCA- 377551 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||||||| | ||||| || || || || || || || ||||| || |||||| Sbjct 377552 GATACTATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAA 377611 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || ||||||||||| || ||||| | || ||| |||| | |||| ||||| Sbjct 377612 CAGAGGCTCATTTTTGCTGGCAAACAGCTTGAGGATGGCCGAACCCTCGCAGACTATAAC 377671 Query 146211 ATACAAAAAGAATCGACT 146228 || || || ||||| ||| Sbjct 377672 ATTCAGAAGGAATCTACT 377689 Score = 87.8 bits (96), Expect = 3e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || || ||||| || || || || | || || || | Sbjct 378200 TGCAGATATTTGTGAAGACGTTGACAGGCAAGACCATCACACTGGAGGTTGAGAGCTCTG 378259 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| ||| || ||| || ||||| ||||| || ||||| | Sbjct 378260 ATACGATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAGC 378319 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| ||||||||||| || || || |||| ||| ||||| | | |||||||| | Sbjct 378320 AAAGGCTCATTTTTGCCGGGAAGCAGCTAGAGGATGGCAGAACCCTCGCCGATTATAACA 378379 Query 146212 TACAAAAAGAATCGAC 146227 | || || ||||| || Sbjct 378380 TTCAGAAGGAATCCAC 378395 >seq23608 Length=1529151 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAAC- 146090 |||| ||||| | || || || || || || || || ||| | || || || | | Sbjct 17386 TGCAGATATTTGTGAAGACGTTGACGGGCAAGACCATCACTCTGGAGGTTGAGNAGCTCT 17445 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| ||| |||||| ||| ||| ||||| ||||| || ||||| Sbjct 17446 GATACGATTGATAATGTCAAAGCTAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAN 17505 Query 146151 -CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAA 146209 || |||||||||||||| || || ||| | || ||| |||| | | |||||||| Sbjct 17506 GCAGAGACTCATTTTTGCCGGCAAGCAACTGGAGGATGGCCGAACCCTGGCCGATTATAA 17565 Query 146210 TATACAAAAAGAATCGAC 146227 || || || ||||| || Sbjct 17566 CATTCAGAAGGAATCCAC 17583 Score = 87.8 bits (96), Expect = 3e-12 Identities = 157/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||| || || | ||||| | || ||||||||||| || |||| || || | | | Sbjct 16702 TGCAGATCTTTGTCAAAACTCTGACCGGAAAAACAATCACGCTTGAAGTTGAGAGCTCA- 16760 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||||||| | || || || |||||| ||| || ||||| ||||||||||| || Sbjct 16761 GATACTATTGATAACGTTAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCCGACCAG 16820 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || || || ||||| || ||||| | || || | || | ||||||| || Sbjct 16821 CAGAGGCTGATCTTTGCTGGAAAACAGCTCGAGGACGGACGCACTCTCGCAGATTACAAC 16880 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || || || ||||||||| | || | || | || ||||||| || Sbjct 16881 ATCCAGAAGGAATCGACTCTTCACCTTGTTCTCCGTCTAAGAGGGGG 16927 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || || || || || ||| | || || ||| | | Sbjct 16930 TGCAGATCTTTGTTAAAACCCTCACTGGCAAGACCATCACTCTGGAAGTCGAAAGTTCTG 16989 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || ||||| ||| || ||||||||||||||||| |||| Sbjct 16990 ATACAATTGACAATGTCAAGGCCAAAATTCAAGACAAGGAAGGCATTCCACCCGACCAAC 17049 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || ||||| | || || | || | | ||||| || | Sbjct 17050 AGAGGCTGATTTTTGCCGGAAAACAGCTCGAGGACGGACGCACTCTTGCCGATTACAACA 17109 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || ||||||||| | || | || | || | |||||||| Sbjct 17110 TCCAGAAGGAATCGACTCTTCACCTTGTTCTCCGTCTCAGAGGAGG 17155 >seq99438 Length=371102 Score = 89.7 bits (98), Expect = 8e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || ||||| || ||||| || || ||| | || ||||| | Sbjct 357957 TGCATATATTTGTGAAGACATTGACCGGAAAGACTATAACTCTGGAGGTAGAGAGCTCTG 358016 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| ||| || || ||| || ||||||||||| || | ||| | Sbjct 358017 ACACGATTGATAATGTGAAAGCCAAGATCCAAGACAAGGAAGGCATTCCCCCTGTTCAGC 358076 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||||||||| ||||| || || || || || ||| | || | | ||||| |||| Sbjct 358077 AAAGACTCATATTTGCTGGAAAGCAGTTGGAGGATGGACGGACCCTTGCTGATTACAATA 358136 Query 146212 TACAAAAAGAATCGACT 146228 | |||||||||| ||| Sbjct 358137 TTAAAAAAGAATCTACT 358153 >seq5369 Length=633823 Score = 87.8 bits (96), Expect = 3e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 ||||||| || | ||||| | || ||||||||||||||| | || || || | | | Sbjct 631399 TGCAAATCTTTGTCAAAACCCTCACTGGAAAAACAATTACTTTAGAAGTTGAGAGCTCA- 631341 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | |||||||| || || || || ||||| |||||||| || || Sbjct 631340 GACACCATTGATAATGTAAAGTCCAAGATTCAGGACAAGGAAGGTATTCCACCGGACCAG 631281 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || |||||||| || ||||| || || || ||| || || || | ||||| || Sbjct 631280 CAGAGGCTCATTTTCGCTGGTAAGCAGTTGGAGGATGGCAGGACATTGGCTGATTACAAC 631221 Query 146211 ATACAAAAAGAATCGAC 146227 || || || ||||| || Sbjct 631220 ATTCAGAAGGAATCCAC 631204 >seq190644 Length=148340 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| ||| |||||| ||| ||| ||||| ||||| || ||||| Sbjct 80444 GATACGATTGATAATGTCAAAGCTAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAG 80385 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || ||||||||||| || || ||| | || ||| |||| | | |||||||| Sbjct 80384 CAGAGGCTCATTTTTGCTGGAAAGCAACTGGAGGATGGCCGAACCCTGGCCGATTATAAC 80325 Query 146211 ATACAAAAAGAATCGAC 146227 || || || ||||| || Sbjct 80324 ATTCAGAAGGAATCCAC 80308 >seq1025 Length=463399 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| || | || || |||||||||||| | || || ||| | Sbjct 80079 TGCAGATCTTTGTAAAGACCCTCACTGGTAAAACAATTACTCTGGAAGTGGAAAGCTCTG 80138 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || ||| || || || || || |||||||| || |||| Sbjct 80139 ACACCATTGACAATGTGAAGGCTAAGATCCAGGACAAGGAGGGAATTCCACCTGACCAAC 80198 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| ||||| || ||||| ||| | | || || | |||||||||| Sbjct 80199 AGAGGTTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTCGTACTCTAGCCGATTATAATA 80258 Query 146212 TACAAAAAGAATCGAC 146227 | || || || ||||| Sbjct 80259 TTCAGAAGGAGTCGAC 80274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744370875533240