Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq63366 98.7 3e-15 >seq63366 Length=285968 Score = 98.7 bits (108), Expect = 3e-15 Identities = 213/319 (67%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 188764 AATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCT 188823 ||| ||||| | | || |||||||| | || || ||||| | || |||| |||||| Sbjct 159843 AATATTCTTATCATGGGTCCTACTGGCTGTGGGAAGACATTGCTCGCAAAAACGTTGGCT 159784 Query 188824 GATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTAT 188883 | | || |||| || | | || | || ||||| |||||| | || || ||| Sbjct 159783 AAATTTATAAATGTGCCCTTTGACATTGCCGACGCAACAAACTTAACACAGGCAGGGTAT 159724 Query 188884 GTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTACGATATC 188943 ||||| ||||||||||| | | ||| | | || |||||||| | |||| | Sbjct 159723 GTAGGGGAAGATGTGGAGTCCATTTTGTATAAGCTTCTCATGGCAGCTGAGTTCGATGTT 159664 Query 188944 GAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCA 189003 | | | ||| |||||| | ||||| |||||||| |||||||| | | || | Sbjct 159663 GCAGCGCCTCAACAAGGAATTTTTTATATTGATGAAGTTGATAAAATCACAAAGAAGGCT 159604 Query 189004 GAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAA 189063 |||||| || | | ||||| ||||| || || || |||||||| || ||||| Sbjct 159603 GAAAGCTTGAATATAAGTAGGGATGTGTCTGGAGAGGGTGTTCAGCAAGCATTTCTAAAA 159544 Query 189064 ATCATTGAAGGTACAGTTG 189082 || | ||||| ||||||| Sbjct 159543 ATGCTAGAAGGAACAGTTG 159525 Score = 93.3 bits (102), Expect = 1e-13 Identities = 216/324 (67%), Gaps = 10/324 (3%) Strand=Plus/Minus Query 188764 AATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCT 188823 ||| ||||| | | || |||||| | | || || ||||| | || |||| |||||| Sbjct 169589 AATATTCTTATCATGGGTCCTACTAGCTGTGGGAAGACATTGCTCGCAAAAACGTTGGCT 169530 Query 188824 GATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTAT 188883 | | || |||| | | | || |||| ||||| |||||| | || | ||| Sbjct 169529 AAATTTGTAAATGTGTCCTTTGACATTGCTGACGCAACAAACTTAACACAGGCATGGTAT 169470 Query 188884 GTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATC----CAAGC-AGCTGATTACG 188938 ||||| ||||||||||| | | ||||| ||||| || || |||||| | || Sbjct 169469 GTAGGGGAAGATGTGGAGTCCAT-----TTCGTATAATCTTCTCATGCCAGCTGAGTTCG 169415 Query 188939 ATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAA 188998 || | | | || || |||||||| ||||| ||||||||||||||||| | | | Sbjct 169414 ATGTTGCAGCGGCTCAAAAAGGAATTGTTTATATTGATGAAGTAGATAAAATCACAAAGA 169355 Query 188999 AATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTAT 189058 | | |||||| || | | || || ||||| || || || ||||| || || Sbjct 169354 AGGCTGAAAGCTTGAATATAAGTAGGGACGTGTCTGGAGAGGGTGTTCAGCAGGCATTGC 169295 Query 189059 TAAAAATCATTGAAGGTACAGTTG 189082 ||||||| | ||||| ||||||| Sbjct 169294 TAAAAATGCTGGAAGGAACAGTTG 169271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1505162736497856