Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq81427 100 6e-16 seq40752 100 6e-16 seq115040 96.9 8e-15 seq31999 96.9 8e-15 seq8217 96.9 8e-15 seq3028 96.9 8e-15 seq941919 93.3 9e-14 seq146773 91.5 3e-13 seq504880 87.8 4e-12 seq10025 87.8 4e-12 seq30241 84.2 5e-11 seq676 84.2 5e-11 >seq81427 Length=658231 Score = 100 bits (110), Expect = 6e-16 Identities = 133/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| ||| | ||||| |||||| | ||||| || ||||| ||| Sbjct 274415 AGGCATTTGAATGATGGTGACTTTGTTCTTTTCAATCGACAACCTAGTCTTCATAAGATG 274356 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGA-CATTTCGATTAAATGTAA 305423 ||||| |||| || | ||||| || || | ||| | |||||||| | || | Sbjct 274355 TCTATCATGGGGCACAGGATCAAA--ATCATGCCATATTCAACATTTCGACTGAACTTGT 274298 Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || | | || |||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 274297 CTGTTACATCACCATATAATGCTGATTTTGATGGAGATGAAATGAATATGCACGTACCTC 274238 Query 305484 A 305484 | Sbjct 274237 A 274237 >seq40752 Length=496462 Score = 100 bits (110), Expect = 6e-16 Identities = 139/188 (74%), Gaps = 10/188 (5%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||| | | | | ||||| |||||| | |||| || ||||| ||| Sbjct 91826 AGGCATTTGAATTATGGTCACTTTGTTCTTTTCAATCGAAAACCTAGTCTTCATAAGATG 91767 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGA-CATTTCGATTAAA--TGT 305421 ||||| |||| || || ||||| || || | ||| | |||||||| | || ||| Sbjct 91766 TCTATCATGGGGCACAAGATCAAA--ATCATGCCATATTCAACATTTCGACTGAACTTGT 91709 Query 305422 AAGTGCTTGTA-CGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTAC 305480 ||| | || | || |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 91708 CAGT---TATATCACCATATAATGCTGATTTTGATGGAGATGAAATGAATATGCACGTAC 91652 Query 305481 CTCAATCA 305488 |||| ||| Sbjct 91651 CTCAGTCA 91644 >seq115040 Length=224263 Score = 96.9 bits (106), Expect = 8e-15 Identities = 324/498 (65%), Gaps = 16/498 (3%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || ||||| | || |||||||||| ||||| | | |||| | || | || || || Sbjct 143647 GACTTTATAAAAAAGGAACTGATCCTATTTTCCATGTCTGATTTGCAAAGATCCATCCCA 143706 Query 279866 CATTTAATGG---ATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAA 279922 | |||| ||||||||||||| | || || || | || ||||||||||| Sbjct 143707 ---TCCATGGTTCATGGTTTGAAACCAGGGAAACGGAAAATATTGTTTTGTTGTTTCAAA 143763 Query 279923 AGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCA 279982 | ||| || || | | || |||||||| ||| |||||||| | ||| ||| | Sbjct 143764 ATAAATTTTGTTACGCAAGAAAAGGTTGCTCAATTATTTGGTTATGTCTTAGAGCATTCT 143823 Query 279983 GGTTATCATCACGGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATT 280040 | ||| ||||| ||||| || |||| ||| | | ||| | | | || ||||||| Sbjct 143824 GCTTACCATCATGGTGAGTAGAGTCT-TTCTA-CCACAATTATTTGAATCGCACAAGATT 143881 Query 280041 TTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTC 280100 || | | |||||| | || || | | | ||| ||| |||||||| || | || Sbjct 143882 TTGTTGGAAGTAACAACATTAACCTCCCTGCTCCACCTGGGAAATTTGGTACTAGAGCTC 143941 Query 280101 ACAATGGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATATTACAA 280160 | ||||||| |||||| |||||||| || | ||||| | ||| || ||| Sbjct 143942 AGGGTGGAAAATATCATGCAAGTGCTCGATATTTTTTCACATGCATGTCACCAATAACAC 144001 Query 280161 ACAAGTTATTTATC---AATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGATGGTC 280217 || || ||| || || | |||| ||| || || | | | || ||||| | Sbjct 144002 AC---TTCTTTTTCCCAAAATATGATGATGTACTCTTGGACTACTTGAATGAAGATGGCC 144058 Query 280218 TTGCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCTC 280277 ||||| ||||| |||| | ||||||| || ||||| ||||| | | | | Sbjct 144059 AAAAAATTGAGCCAACGAGGTATGTTTCAATTATTCCAATGATCCTTGTAACTAGAAGTG 144118 Query 280278 AAGGAATTGGAACAGGTT 280295 ||||||||||||| |||| Sbjct 144119 AAGGAATTGGAACTGGTT 144136 >seq31999 Length=955872 Score = 96.9 bits (106), Expect = 8e-15 Identities = 137/187 (73%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||||| ||| | ||||| |||||| | || | || ||||| | | Sbjct 551736 AGGCATTTGAATGACAGTGACTTTGTTCTTTTCAATTGAAAATCTAGTCTTCATAATACG 551795 Query 305366 TCTATGATG--GCTCATAAAGTCAAAGTATTAT-CTGGATTGA-CATTTCGATTAAATGT 305421 ||||| ||| || ||| | ||||| || || | ||||| |||||||||| ||| | Sbjct 551796 TCTATCATGAGGCACATGA--TCAAA--ATCATGCCATATTGAACATTTCGATTGAATTT 551851 Query 305422 AAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACC 305481 | | | || ||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 551852 CTCAGTTACATCACCATATAATGTTGATTTTGATGGAGATGAAATGAATATGCACGTACC 551911 Query 305482 TCAATCA 305488 || ||| Sbjct 551912 CCATTCA 551918 >seq8217 Length=915248 Score = 96.9 bits (106), Expect = 8e-15 Identities = 137/187 (73%), Gaps = 8/187 (4%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| ||| | ||||| |||||| | ||||| || ||||| || Sbjct 717874 AGGCATTTGAATGATGGTGAATTTGTTCTTTTCAATCGACAACCTAGTCTTCATAAGATC 717815 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGA-CATTTCGATTAAA--TGT 305421 ||||| |||| || | ||||| || || | ||| | |||||||| | || ||| Sbjct 717814 TCTATCATGGGGCACATGATCAAA--ATCATGCAATATTCAACATTTCGACTGAACTTGT 717757 Query 305422 AAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACC 305481 ||| | | || |||||| | |||||||||||||||||||||||||||||||||| Sbjct 717756 CAGT--TACATCACCATATAATACTGATTTTGATGGAGATGAAATGAATATGCATGTACT 717699 Query 305482 TCAATCA 305488 ||| ||| Sbjct 717698 TCAGTCA 717692 >seq3028 Length=508140 Score = 96.9 bits (106), Expect = 8e-15 Identities = 138/187 (74%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| || | ||||| |||||| | ||||| || || || ||| Sbjct 276907 AGGCATTTGAATGATGGAGACTTTGTTCTTTTCAATCGACAACCTAGTCTTCACAAGATG 276966 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGA-CATTTCGATTAAA--TGT 305421 ||||| |||| || | ||||| || || | | | | | |||||||| |||| ||| Sbjct 276967 TCTATCATGGGGCACAGGATCAAA--ATCATGCCGTACTCAACATTTCGACTAAACTTGT 277024 Query 305422 AAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACC 305481 ||| | | | || |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 277025 CAGT-CACATCC-CCATATAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTACC 277082 Query 305482 TCAATCA 305488 || ||| Sbjct 277083 ACAGTCA 277089 >seq941919 Length=53251 Score = 93.3 bits (102), Expect = 9e-14 Identities = 130/178 (73%), Gaps = 7/178 (4%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 |||| ||||| ||| | ||||| |||||| | ||||| || ||||| |||||| Sbjct 18506 CATTCAAATGATGGTGACTTTGTTCTTTTCAATTGACAACCTAGTCTTCATAAGATGTCT 18565 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGA-CATTTCGATTAAATGTAAGTG 305426 || |||| || || ||||| || || | ||| | |||||||| | || || | Sbjct 18566 ATCATGGGGCACAAGATCAAA--ATCATGCCATATTCAACATTTCGACTGAACTTAGTTA 18623 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 | | || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 18624 CATCAACA---TATAATGCTGATTTTGATGGAGATGAAATGAATATGCACGTACCTCA 18678 >seq146773 Length=580404 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/180 (73%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| ||| | ||||| |||||| | ||| | || ||||| ||| Sbjct 473403 AGGCATTTGAATGATGGTGACTTTGTTCTTTTCAATCGACAATCTAGTCTTCATAAGATG 473462 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACA-TTTCGATTAAA--TGTA 305422 ||||| |||| ||| | ||||| | | || ||| | | |||||| | || ||| Sbjct 473463 TCTATCATGGGGCATGAGATCAAAATCAT-TCCATATTCAAAATTTCGACTGAACTTGTC 473521 Query 305423 AGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 ||| | | || |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 473522 AGT--TACATCACCATATAATGCTAATTTTGATGGAGATGAAATGAATATGCACGTACCT 473579 >seq504880 Length=54116 Score = 87.8 bits (96), Expect = 4e-12 Identities = 137/188 (73%), Gaps = 10/188 (5%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| | | | ||| | |||||| | ||||| || ||||| ||| Sbjct 47811 AGGCATTTGAATGATGGTCACTTTGTTATTTTCAATCGACAACCTAATCTTCATAAGATG 47870 Query 305366 TCTATGATGGC-TCATAAAGTCAAAGTATTAT-CTGGATTGA-CATTTCGATTAAA--TG 305420 ||||| |||| | | | ||||| || || | ||| | ||||| || | || || Sbjct 47871 TCTATCATGGGGTGCTTGA-TCAAA--ATCATGCCATATTCAACATTTTGACTGAACTTG 47927 Query 305421 TAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTAC 305480 | ||| | | || |||||||| |||||||||||||||||||||||||||||||||| Sbjct 47928 TTAGT--TACACCACCATATAATGCCGATTTTGATGGAGATGAAATGAATATGCATGTAC 47985 Query 305481 CTCAATCA 305488 |||| ||| Sbjct 47986 CTCAGTCA 47993 >seq10025 Length=1186428 Score = 87.8 bits (96), Expect = 4e-12 Identities = 133/184 (72%), Gaps = 8/184 (4%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||||||| ||| | ||| | |||||| | ||||| || ||||| |||||| Sbjct 1099887 CATTTGAATGATGGTGAATTTGTTATTTTCAATCGACAACCTAGTCTTCATAAGATGTCT 1099946 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGA-CATTTCGATTAAA--TGTAAG 305424 || |||| || | ||||| || || | ||| | ||||| || | || ||| || Sbjct 1099947 ATCATGGGGCACATGATCAAA--ATCATGCCATATTCAACATTTTGACTGAACTTGTCAG 1100004 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 | | | || ||||||| |||||| |||||||||||||||||||||| |||||||| Sbjct 1100005 T--TACATCACCATATAATGTTGATTTTTATGGAGATGAAATGAATATGCACGTACCTCA 1100062 Query 305485 ATCA 305488 ||| Sbjct 1100063 GTCA 1100066 >seq30241 Length=1363696 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/187 (72%), Gaps = 8/187 (4%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| | | | ||||| |||||| ||||| || ||||| ||| Sbjct 349566 AGGCATTTGAATGATGGTCACTTTGTTCTTTTCAATCAACAACCTAGTCTTCATAAGATG 349507 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGA-CATTTCGATTAAA--TGT 305421 ||||| |||| || || ||||| || || | ||| | |||||||| | || ||| Sbjct 349506 TCTATCATGGGGCACAAGATCAAA--ATCATGCCATATTAAACATTTCGACTGAACTTGT 349449 Query 305422 AAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACC 305481 ||| | | || ||||||| |||||||||||| ||||||| |||||||| |||| Sbjct 349448 TAGT--TACATCACCATATAATGATGATTTTGATGGATATGAAATTAATATGCACATACC 349391 Query 305482 TCAATCA 305488 ||| ||| Sbjct 349390 TCATTCA 349384 >seq676 Length=652097 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/184 (73%), Gaps = 10/184 (5%) Strand=Plus/Minus Query 305310 ATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTA 305369 |||||||||| ||| | |||| |||||| ||||| || ||||| ||||||| Sbjct 625276 ATTTGAATGATGGTGACTTTTTTCTTTTCAATCAACAACCTAGTCTTCATAAGATGTCTA 625217 Query 305370 TGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGA-CATTTCGATTAAA--TGTAAG- 305424 | |||| || | ||||| || || | ||| | |||||||| | || ||| || Sbjct 625216 TCATGGGGCAAAGGATCAAA--ATCATGCCATATTCAACATTTCGACTGAACTTGTTAGG 625159 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 | | | ||| | ||||||| |||||| |||||||| |||||||||||||||||||||| Sbjct 625158 TACAT-TAC--CATATAATGTTGATTTTAATGGAGATTAAATGAATATGCATGTACCTCA 625102 Query 305485 ATCA 305488 ||| Sbjct 625101 GTCA 625098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1122140041147217