Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq12734 95.1 1e-14 seq43626 91.5 1e-13 seq5369 91.5 1e-13 seq3210 89.7 5e-13 seq562416 84.2 2e-11 >seq12734 Length=494798 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || |||||||| |||||||| || ||| || |||||| |||||||| |||| | Sbjct 183458 GATTCCTTTTGAATATTGTAGTCTGCCAAGGTTCGGCCATCTTCCAGCTGTTTTCCGGCA 183399 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | ||||||||||| || || || || || ||||| || || || || ||||| Sbjct 183398 AATATTAGACGCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTCACA 183339 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | ||||||||| | || | ||| ||||| || || ||||| Sbjct 183338 TTGTCGATGGTATCTGAGCTCTCCACTTCCAATGTTATCGTCTTACCGGTGAGGGTTTTC 183279 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 183278 ACAAAGATCTGCATG 183264 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||| ||| | | | ||||| |||||||| ||||||||| || ||| | ||||| Sbjct 183930 AACCAGATGCAGGGTCGACTCCTTTTGAATATTGTAGTCGGCCAAGGTTCTGCCGTCTTC 183871 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||| || |||| | |||| |||||||| || || || || ||||||||||| || Sbjct 183870 GAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCCTTCTTTGTCCTG 183811 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || || | | || | || || | ||| ||||| | || | || || Sbjct 183810 GATCTTGGCCTTAACATTATCAATGGTGTCCGAGCTCTCAACTTCCAAAGTAATTGTCTT 183751 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| || ||||| | ||||| ||||| Sbjct 183750 ACCAGTGAGGGTTTTAACAAAAATTTGCAT 183721 >seq43626 Length=83058 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 131920 ATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTG 131979 ||| | | |||| || || ||||||||||| || || ||| || ||| || ||||| Sbjct 38580 ATGCAGGGTTGATTCCTTCTGAATGTTGTAATCTGCCAAGGTCCGGCCATCCTCCAGCTG 38639 Query 131980 TTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT 132039 ||||| | | ||||||| | ||| || ||||| || || ||||| ||||| || || Sbjct 38640 CTTACCAGCAAAGATTAGCCTCTGCTGGTCTGGTGGAATACCTTCCTTATCCTGGATCTT 38699 Query 132040 TTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGT 132099 | |||| | || | || || | ||||||||| | || | || || ||||| Sbjct 38700 TGCCTTCACATTATCAATGGTGTCCGAGCTCTCCACTTCCAGAGTAATTGTCTTGCCAGT 38759 Query 132100 CAGAGTTTTTATGAAAATCTGCATG 132124 ||||||||| | || ||||||||| Sbjct 38760 CAGAGTTTTGACAAAGATCTGCATG 38784 >seq5369 Length=633823 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || ||||| ||||||||| | ||| || ||||||||||||||| |||| | Sbjct 631663 GATTCCTTCTGAATATTGTAGTCGGCAAGGGTTCGACCATCTTCGAGCTGTTTTCCGGCA 631722 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || ||||| || || || ||||| || ||| || | Sbjct 631723 AAGATAAGACGCTGCTGGTCAGGAGGAATACCCTCCTTATCCTGGATCTTTGCCTTTACA 631782 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | ||| || |||| || | ||| || ||||| || ||||| Sbjct 631783 TTATCAATGGTATCAGAGCTCTCGACCTCGAGAGTGATCGTCTTGCCAGTTAGGGTTTTG 631842 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 631843 ACAAATATCTGCATG 631857 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| || || ||||||||||| ||| || || || ||| || | ||| ||||| | Sbjct 630977 TTGATTCCTTCTGAATGTTGTAATCGGCCAACGTCCGGCCATCCTCCAACTGCTTACCAG 631036 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | ||||||| | ||| || ||||| || || ||||| ||||| || ||| |||| Sbjct 631037 CAAAGATTAGCCTCTGCTGGTCTGGTGGAATACCTTCCTTATCCTGGATCTTTGCCTTCA 631096 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | ||||| | ||||||||| | || | || || ||||| ||||||| Sbjct 631097 CATTATCAATGGTATCCGAGCTCTCCACTTCCAGAGTGATTGTCTTGCCAGTTAGAGTTT 631156 Query 132108 TTATGAAAATCTGCATG 132124 | | || ||||||||| Sbjct 631157 TGACAAAGATCTGCATG 631173 >seq3210 Length=179012 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 131921 TGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGT 131980 |||| | |||| || || |||||||||||||| | ||| || |||||| ||||| Sbjct 103587 TGTAGGGTTGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTTCGGCCATCTTCAAGCTGC 103528 Query 131981 TTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTT 132040 || || | | |||| |||||||| || || ||||| |||||||| || || || || Sbjct 103527 TTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGTATCTTG 103468 Query 132041 TGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTC 132100 ||||| | || | || || | ||||||||| | || | ||| || || || Sbjct 103467 GCTTTCACATTGTCGATTGTGTCCGAGCTCTCCACTTCCAAAGTAATCGTCTTTCCTGTG 103408 Query 132101 AGAGTTTTTATGAAAATCTGCATG 132124 || ||||| | || ||||||||| Sbjct 103407 AGGGTTTTGACAAAGATCTGCATG 103384 >seq562416 Length=95391 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||||||||||||| || || | | |||||| || || || || | | Sbjct 53924 GATTCTTTTTGAATGTTGTAGTCGGCCAGAGTCCTCCCATCTTCAAGTTGCTTCCCTGCA 53865 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||||| ||||| ||||| || | || ||||| |||||| || | Sbjct 53864 AAGATCAATCGCTGCTGATCGGGAGGAATCCTCTCCTTATCTTGAATTTTGGCCTTGACG 53805 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | ||| ||||| | ||| | ||||| || ||||| ||||| Sbjct 53804 TTGTCAATAGTGTCTGAGCTCTCGACTTCAAGCGTGATTGTTTTTCCGGTCAGGGTTTTG 53745 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 53744 ACAAAGATCTGCAT 53731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451272779188920