Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq562416 98.7 8e-16 seq5369 98.7 8e-16 seq190644 91.5 1e-13 seq8179 89.7 4e-13 seq23608 84.2 2e-11 seq620036 82.4 6e-11 seq74129 82.4 6e-11 seq6377 82.4 6e-11 >seq562416 Length=95391 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||| ||||| | ||||||||| | |||||| | |||||||| ||| | Sbjct 53731 ATGCAGATCTTTGTCAAAACCCTGACCGGAAAAACAATCACGCTTGAAGTCGAGAGCTCA 53790 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || |||||| ||||| ||| | || || |||||||| Sbjct 53791 -GACACTATTGACAACGTCAAGGCCAAAATTCAAGATAAGGAGAGGATTCCTCCCGATCA 53849 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || | || | | || || ||||| ||||||| || | | | ||| ||||| Sbjct 53850 GCAGCGATTGATCTTTGCAGGGAAGCAACTTGAAGATGGGAGGACTCTGGCCGACTACAA 53909 Query 25354 TATTCAAAAAGAATCCAC 25371 |||||||||||||| || Sbjct 53910 CATTCAAAAAGAATCTAC 53927 >seq5369 Length=633823 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | ||||| ||||| |||| || || ||||||| |||| ||||| Sbjct 631860 CAGCATGCAGATATTTGTCAAAACCCTAACTGGCAAGACGATCACTCTCGAGGTCGAGAG 631801 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| || || | ||||| ||| || ||||| |||||||| || || || Sbjct 631800 CTCTGATACCATTGATAATGTAAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGA 631741 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||||| | || || | | ||| ||||| |||||||||| | ||| | ||| || Sbjct 631740 CCAGCAGCGTCTTATCTTTGCCGGAAAACAGCTCGAAGATGGTCGAACCCTTGCCGACTA 631681 Query 25351 CAATATTCAAAAAGAATCCACCATTCA 25377 ||||||||| || ||||| ||| |||| Sbjct 631680 CAATATTCAGAAGGAATCTACCCTTCA 631654 >seq190644 Length=148340 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||| ||||| | ||||||||| | |||||| | ||||| || ||| | Sbjct 80776 ATGCAGATCTTTGTCAAAACCCTGACCGGAAAAACAATCACGCTTGAAGTTGAGAGCTCA 80717 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || |||||| ||||| ||||| || || |||||||| Sbjct 80716 -GACACTATTGACAACGTCAAGGCCAAAATTCAAGATAAGGAGGGGATTCCTCCCGATCA 80658 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||| | || | | || || ||||| ||||||| || | | | ||| ||||| Sbjct 80657 GCAGAGATTGATCTTTGCAGGGAAGCAACTTGAAGATGGGAGGACTCTGGCCGACTACAA 80598 Query 25354 TATT------CAAAAAGAATCCAC 25371 |||| ||||||||||| || Sbjct 80597 TATTNNNNNNCAAAAAGAATCTAC 80574 >seq8179 Length=775255 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 |||||| | ||||| ||||| | |||||||| | ||||| | ||||| || ||| | Sbjct 377948 ATGCAAATCTTTGTCAAAACCCTGACCGGAAAGACAATCACTCTTGAAGTTGAGAGCTCA 378007 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || ||| || || |||||||| || || |||||||| Sbjct 378008 -GACACTATTGATAACGTGAAGGCAAAGATCCAGGACAAAGAGGGGATTCCTCCCGATCA 378066 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||| | || | | || || ||||| ||||||| || | | | ||| ||||| Sbjct 378067 GCAGAGATTGATCTTTGCTGGGAAGCAACTTGAAGATGGGAGGACTCTAGCCGACTACAA 378126 Query 25354 TATTCAAAAAGAATCCAC 25371 |||||||| ||||| || Sbjct 378127 CATTCAAAAGGAATCTAC 378144 >seq23608 Length=1529151 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 |||||| | ||||| |||| | || || || | |||||| | ||||| || ||| | Sbjct 310910 ATGCAAATATTTGTCGAAACCCTGACTGGCAAGACAATCACGCTTGAAGTTGAGAGCTCA 310969 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || || ||| ||||| ||||| ||||| | |||||| Sbjct 310970 -GACACTATTGATAACGTGAAGGCCAAGATTCAGGATAAGGAGGGGATACCTCTCGATCA 311028 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||| | || | | | || ||||| |||||||| || | | | ||| ||||| Sbjct 311029 GCAAAGATTGATCTTTTCCAGAAAGCAACTTGAAGATGAGAGGACTCTAGCCGACTACAA 311088 Query 25354 TATTCAAAAAGAATC 25368 |||||||| ||||| Sbjct 311089 CATTCAAAAGGAATC 311103 >seq620036 Length=34888 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/199 (70%), Gaps = 7/199 (4%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGC-CA 25232 |||||| | ||| | ||||| ||||||| || | |||||| | ||||| || || || Sbjct 32729 ATGCAAATCTTTTTCAAAACCCTAACCGGCAAGACAATCACGCTTGAAGTTGAGAGTTCA 32670 Query 25233 ACGATACTATCGAGCAA---GTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 | | ||||| || || || || || ||| ||| | ||||| ||||| |||| Sbjct 32669 A--ACACTATTGATCATAACGTGAACGCCAAGATTCAGGATGAGGAGGGGATACCTCCCG 32612 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349 ||||||||||| | || | | ||| || ||||| |||||| || | | | ||| | Sbjct 32611 ATCAGCAAAGATTGATCTTTGTCGGAAAGCAACTTGAAGATAGGAGGATTCTAGCCGACT 32552 Query 25350 ACAATATTCAAAAAGAATC 25368 |||| |||||||| ||||| Sbjct 32551 ACAACATTCAAAAGGAATC 32533 >seq74129 Length=283392 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||||||||| | ||||| || |||| || | ||||| || | Sbjct 222984 ATGCAGATCTTTGTAAAAACCCTTACCGGTAAGACGATTACTTTGGAAGTTGAGAGCTCG 223043 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | ||||| || || || || || |||||||| |||||||| Sbjct 223044 GATACCATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAAGGTATACCCCCCGATCAA 223103 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || || | | ||||| || |||||||||| ||| | |||||||||| Sbjct 223104 CAACGCCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGAACCCTTGCCGATTACAAT 223163 Query 25355 ATTCAAAAAGAATCCACC 25372 || ||||| ||||| ||| Sbjct 223164 ATCCAAAAGGAATCGACC 223181 >seq6377 Length=1564332 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | ||||| ||| | ||||| | ||||||||| | Sbjct 1467660 ATGCAGATCTTTGTCAAAACCCTGACCGGCAAAACAATCACTCTGGAAGTCGAAAGCTCT 1467601 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || |||||| || || || || || || ||||||||| Sbjct 1467600 GACACAATTGACAACGTCAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCCGATCAG 1467541 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || || | | || ||||| |||||||||| | | | || ||||||||| Sbjct 1467540 CAGAGGCTGATCTTTGCTGGAAAACAGCTCGAAGATGGACGCACTCTCGCCGATTACAAC 1467481 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || || || ||||| || |||| Sbjct 1467480 ATCCAGAAGGAATCGACTCTTCA 1467458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422026135180181