Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq56275 109 7e-19 seq369028 96.9 5e-15 seq852351 95.1 2e-14 seq73847 91.5 2e-13 seq19246 91.5 2e-13 seq570714 87.8 2e-12 seq86877 86.0 8e-12 seq38403 86.0 8e-12 >seq56275 Length=114807 Score = 109 bits (120), Expect = 7e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||||| || | ||||| | |||| | || | || ||| || | |||||| Sbjct 26229 TCCTCCTTGATCTACATAGCGAGCAGTATCATTAAACACACGCAACATTGGCACAATACC 26170 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||||||| || ||||| | ||| ||||||||| || || Sbjct 26169 ATTTGATGTGCCATTTGTTCCACGTATGTAACTATTTGTTGAACGAATATTATGGATCGA 26110 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | || || |||||||| ||| || | |||||| ||| | || ||||| || Sbjct 26109 AACTCCAATGCCTCCTGCTGATTTGCTAATCACAGCACATTCTTTGAGGGTATCATAAAT 26050 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||| || ||||||||||| |||| | |||||| |||||| Sbjct 26049 ACCTTCAATGCTATCATCCTTCATACAGATAAGAAAGCAGCTA 26007 >seq369028 Length=352451 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | ||| | || |||| ||| || | |||||| Sbjct 63457 TCCACCTTGATCAACATAACGAGCAGTATCATTGAATACCCTCAACATTGGCACAATACC 63516 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | ||||| ||||| |||||||| | |||| ||||| ||| | || Sbjct 63517 ATTCGATGTGCCATTAGTTCCTCGGATATAACTACTGGTTGCACGAATGTTATGTACTGA 63576 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| | |||||| || ||| |||| ||||| || | || |||||||| Sbjct 63577 AACACCAAGTCCTCCAGCTGATTTGCTTATTACGGCACATTCCTTTAGAGTATCATATAT 63636 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| |||||||||||| |||| || ||| || |||||| Sbjct 63637 CCCCTCAATGCTATCATCTTTCATACAAACAAGGAAGCAGCTA 63679 Score = 86.0 bits (94), Expect = 8e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 68734 AACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGA 68793 |||||||| | | |||||||| |||||| ||||| | | |||||||| || ||| Sbjct 61463 AACACTCTTCTGCTATAAATATTTGAGGTATAAGGTTCAAAGCACTCATTATTCCCAAGA 61522 Query 68794 ATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGT 68853 |||||| |||||| |||||||||||||| || || | | | ||||| | |||||| Sbjct 61523 ATTTGACTAGTTGAAGCAGTTGGCATAGGAGCAACAAGAAGAGAGTTTCTCACACCATGC 61582 Query 68854 GTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGAT 68893 || | || || || |||| |||||||||| ||| Sbjct 61583 TTTGTTATCTTGTCCCTTAGCCCAGCCCAATCCCAACGAT 61622 >seq852351 Length=70276 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| | ||||| || ||| | | |||| | || || ||| || | |||||| Sbjct 34842 TCCTCCTTAATCTACATAGTGAGCAATATGATTAAACACATGCAACATTGGCACAATACC 34901 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||||||| || ||||| | ||| ||||||||| || || Sbjct 34902 ATTTGATGTGCCATTTGTTCCATGTATGTAACTATTTGTTGAACGAATATTATGGATTGA 34961 Query 69870 TAGACCTATTCCTCCTGC-CATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATA 69928 | || ||||||||||| ||||| | || | | |||| ||| | || ||||| | Sbjct 34962 AACTCCAATTCCTCCTGCTGATTTTCTA-ATCACAACACATTTTTTGAGGGTATCATAAA 35020 Query 69929 TACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||| || ||||||||||| |||| || |||||| || ||| Sbjct 35021 TACCTTCAATGCTATCATCCTTCATACAAATAAGAAAGCAACTA 35064 >seq73847 Length=1089629 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||||| || | ||||| | |||| | || | || ||| || | ||| || Sbjct 999801 TCCTCCTTGATCTACATAGCAAGCAGTATCATTAAACACACACAACATTGGCACAATGCC 999742 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | ||||||||||| || ||||| | ||| ||||||||| || || Sbjct 999741 ATTTGATGTGTCATTTGTTCCACGTATGTAACTATTTTTTGAACGAATATTATGGATCGA 999682 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | || || |||||||| ||| || | | |||| ||| | || ||||| || Sbjct 999681 AACTCCAATACCTCCTGCTGGTTTTCTAATCACAACACATTCTTTGAGGGTATCATAAAT 999622 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||| || ||| |||| || |||| | | |||||| |||||| Sbjct 999621 ACCATCAATGTTATCGTCCTTCATATAGATAAGAAAGCAGCTA 999579 >seq19246 Length=439232 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| |||| || || | ||| | | |||| | || | || ||| || | ||| || Sbjct 410786 TCCTCCTTGATATACATAGCGAGCAATATCATTAAACACACACAACATTGGCACAATGCC 410845 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||||||| || || || | ||| ||||||||| || || Sbjct 410846 ATTTGATGTTCCATTTGTTCCACGTATGTATCTATTTGTTGAACGAATATTATGGATCGA 410905 Query 69870 TAGACCTATTCCTCCTGC-CATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATA 69928 | || || |||||||| ||||| | || | | |||| ||| | || ||||| | Sbjct 410906 AACTCCAATGCCTCCTGCTGATTTTCTA-ATCACATCACATTCTTTAAGAGTATCATAAA 410964 Query 69929 TACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||| || ||||||||||| |||| | |||||| |||||| Sbjct 410965 TACCTTCAATGCTATCATCCTTCATACAGATAAGAAAGCAGCTA 411008 >seq570714 Length=178535 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| |||| || || | || || | |||| | || | | ||| || | ||| || Sbjct 58073 TCCTCCTTGATATACATAGCGAGCGGTATCATTAAACACAC--AACATTGGCACAATGCC 58130 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||||||| || ||||| | ||| ||||||||| || || Sbjct 58131 ATTTGATGTGCCATTTGTTCCACGTATGTAACTATTTTTTGAACGAATATTATGGATCGA 58190 Query 69870 TAGACCTATTCCTCCTGC-CATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATA 69928 | || || |||||||| ||||| | || | | |||| ||| | || ||||| | Sbjct 58191 AACTCCAATGCCTCCTGCTGATTTTCTA-ATCACATCACATTCTTTAAGGGTATCATAAA 58249 Query 69929 TACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||| || ||||||||||| |||| | |||||| |||||| Sbjct 58250 TACCTTCAATGCTATCATCCTTCATACAGATAAGAAAGCAGCTA 58293 >seq86877 Length=569069 Score = 86.0 bits (94), Expect = 8e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||||| || ||||| | |||| | || | || ||| | | ||| ||| Sbjct 51818 CCTCCTTGATCTACATAGTGAGCAGTATCATTAAACACACACAACATTGCCACAATGCCA 51877 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| || ||||| | ||| ||||||||| || || Sbjct 51878 TTTGATGTGCCATTTGTTCCACGTATGTAACTCTTTGTTGAACGAATATTATGGATTGAA 51937 Query 69871 AGACCTATTCCTCCTGC-CATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | || || |||| ||| |||||| | || | | |||| ||| | || ||||| || Sbjct 51938 AATCCAATGCCTCTTGCTGATTTTATA-ATCACAACACATTATTTTAGGGTATCATAAAT 51996 Query 69930 ACCCTCTATGCTATCATCTATCAT 69953 ||| || ||||||||||| |||| Sbjct 51997 ACCTTCAATGCTATCATCCTTCAT 52020 >seq38403 Length=1032131 Score = 86.0 bits (94), Expect = 8e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || || || || |||||| || | |||||| || | ||||| ||||| | ||||||| Sbjct 534881 TCAAACTCTTCACCCCAACAGTCTGCTAATCCAAGAGACTCATTAGGACAGAACAATGAC 534822 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AA 69635 || | | ||| |||| |||| |||||||||||||| |||||| ||| | ||| || Sbjct 534821 CAAATAACATTTTCCTAGACTCTCTTCATAAATAGATCTATAATCCATAGA-CAATAGAA 534763 Query 69636 GAGATCTCTGGTTCTATTTTCTTCAT 69661 | |||||| | ||||||| ||||| Sbjct 534762 CAAATCTCTTGCCCTATTTTATTCAT 534737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 650390178043080