Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq96513 95.1 1e-14 seq8144 93.3 5e-14 seq2551 89.7 6e-13 >seq96513 Length=125968 Score = 95.1 bits (104), Expect = 1e-14 Identities = 191/277 (69%), Gaps = 10/277 (4%) Strand=Plus/Minus Query 9536 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9595 || || ||||| | || |||| || | |||||| ||||| || || || ||||||| Sbjct 98914 CCAGGCCGAAGTAAAGCCGCATCCAGCACATCAACTCGATTGGTGGCTGCAATGACAATC 98855 Query 9596 ATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTC 9654 | || || ||| | ||||| ||||||||||| || | | |||||| | || ||||| Sbjct 98854 ACTCCAGTGTTCCCT-TCAAATCCATCCATCTCAGTAAGCAATTGGTTCAATGTCTGTTC 98796 Query 9655 CCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAAT 9711 ||||||||||| || |||| || || | | ||| ||||||| ||||||| Sbjct 98795 TCGTTCATCATTGCCT---CCACCAATTCCTGCTCCCCTCTGCCTTCCCACTGCATCAAG 98739 Query 9712 CTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTA 9770 ||||| ||||| | || || || |||||| | | ||| ||| ||||| || | Sbjct 98738 TTCATCTATGAAAATAATACAAGGCGCATTTTCCTTTGCCCTCTTGAAA-AGATCACGAA 98680 Query 9771 CACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 | | ||| || || || ||||||||||| | ||| Sbjct 98679 CCCTAGAGGCTCCTACTCCTACAAACATCTCTATAAA 98643 >seq8144 Length=769616 Score = 93.3 bits (102), Expect = 5e-14 Identities = 272/412 (66%), Gaps = 18/412 (4%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || || || || | ||||| ||| || | ||| ||||||||||| || Sbjct 578399 ATCAAACCGGCCCGGCCGCAACAGCGCTGAATCCAGAACATCCGGCCGATTCGTCGCTGC 578458 Query 9586 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | |||| || || |||| | | || || |||||||| ||||| || || || Sbjct 578459 AAGAACAATAACCCCGCTGTTCCCAGAG--AACCCGTCCATCTCCGTCAACAGCTGATTG 578516 Query 9644 ATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9701 || || ||||||| ||||||||| ||| | || || | || | | |||| | || | Sbjct 578517 ATTGTCTGTTCCCTTTCATCATTACCGCCGCCAAGCC--CGGCCCCCCTTTGCCTCCCTA 578574 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTTCA 9757 | || ||||| ||||| || ||||||||||| || ||| || || | || Sbjct 578575 CTGCGTCAATTTCATCGATAAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----TCG 578630 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 || || |||||||| || || || ||||| || || | ||| || || | | || Sbjct 578631 AACAGGTCCCGTACCCGGGACGCACCTACACCGACGAAGAGCTCGACGAACTCCGACGCC 578690 Query 9818 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 | ||| | |||||| || | || || | | || ||||| || |||||||| Sbjct 578691 GCACAGGAAAAGAAGGGAACCCCGGCCTCTCCTGAGACTGCCCGGGCCAGTAGAGTCTTC 578750 Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCCA 9928 ||||| |||||| ||| | || | ||| | | | || |||||||| ||| Sbjct 578751 CCCGTCCCTGGCGGACCGACCAGTA-AGCATCCCTTGGGGATCTTGGCACCA 578801 >seq2551 Length=567474 Score = 89.7 bits (98), Expect = 6e-13 Identities = 246/367 (67%), Gaps = 19/367 (5%) Strand=Plus/Plus Query 7283 CCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTC--TACGGAGTCTCAAAGGTTG 7340 ||||| || ||| | || |||||| |||| | ||| || | || || ||| ||| Sbjct 353196 CCACAGAATGAGAACACCCCCTTCCACCCGAGAA--GTCCTTATGCTGTGTCCAAGCTTG 353253 Query 7341 CGGCACATTGGC--TC-GTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCG 7397 | || |||||| || ||||| ||| | || | || ||| ||||||| ||| | Sbjct 353254 CAGCCCATTGGTATTCTGTCAAC---TACAGAGAAGCATATGGAATGTTTGCCTGCAATG 353310 Query 7398 GAATCCTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTA 7457 | ||||||||||||||||| || || ||| |||||| ||||||| |||| |||||| | Sbjct 353311 GGATCCTCTTCAACCATGAGTCCCCAAGAAGAGGTGAGAACTTTGTGACAAGGAAGATCA 353370 Query 7458 CCGAGGGTATCAAACAAATCATGAAGGG---TGAAAAGGAGTTCATTGAATTGGGTAACA 7514 || || | | |||| | || | | ||| || | | ||||| || Sbjct 353371 CCAGGGCTGTGGGGAGGATCAAAATTGGGCTTCAGAAGAAG---CTGTATTTGGGCAATC 353427 Query 7515 TAAACGCGGCGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGC 7574 | || || | | |||||||| || ||||||||| || || |||||| | ||| Sbjct 353428 TCAAGGCCTCCCGGGATTGGGGATTTGCTGGGGACTATGTGGAGGCAATGTGGTTGATGG 353487 Query 7575 TTCAACAAGAGGAAGCC-GACGAATATGTAGTAGCAACGGGTGAGACCCATACAG-TGAG 7632 | || ||||| ||||| || || ||||| || || || | ||| | |||||| | |||| Sbjct 353488 TGCAGCAAGA-TAAGCCGGATGACTATGTTGTTGCCACTGATGATAGCCATACCGTTGAG 353546 Query 7633 GCGGTTC 7639 | | ||| Sbjct 353547 GAGTTTC 353553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552252490516280