Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq17058 93.3 2e-14 seq105000 89.7 2e-13 seq312239 86.0 3e-12 seq77569 86.0 3e-12 seq208720 84.2 1e-11 seq110573 84.2 1e-11 seq43890 84.2 1e-11 seq114530 82.4 3e-11 seq49990 82.4 3e-11 >seq17058 Length=1627875 Score = 93.3 bits (102), Expect = 2e-14 Identities = 243/367 (66%), Gaps = 13/367 (4%) Strand=Plus/Minus Query 64927 CATCGGAATAATTGGTGCATAAAAGATAGGCTCAACAATGAGACCATCATCATCCAAATA 64986 ||| ||||||||||| |||| | || ||||||| | | ||||| |||| ||| || Sbjct 448408 CATTGGAATAATTGGCACATACCACATTGGCTCAATTTTTTGGCCATCTTCATTCAAGTA 448349 Query 64987 CTTCAAAATGGCATCATCCTCTTTTGGAAATATAGAACGAGTTATTTT----ATTCAATT 65042 | ||| | ||||||| | |||||| || | | || |||||| ||||| | Sbjct 448348 GTCCAAGAGTACATCATCATATTTTGGGAACAATAAGCGTGTTATTGGTGACATTCATGT 448289 Query 65043 GAGTATAAATATATCTTTCGGATGCGTGGTCTTGTCCAGTTCG---TCGTGTTCCAAACT 65099 || ||| ||||| || ||| ||||||| |||| || | || || | ||| | Sbjct 448288 GA----AAACATATCAAGCGCTTGCATGGTCTTTTCCACTTTGGGCTCTGGTACAAAATT 448233 Query 65100 GACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGA 65159 ||| ||| | | ||||||||||| |||| ||||| || || ||||| | Sbjct 448232 TCCCAAGTGGAGCAAGGAGGTTAATATTGTTACTTCCAACAAAATCTTGTGCTATTCCAA 448173 Query 65160 TAATTGCTGCATTTAA-ACTCGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATAT 65218 |||||| ||| || |||| ||||||||||| || |||| || ||||||| Sbjct 448172 TAATTG-TGCTAGCAAGACTCTACTCACCGTGATGGTAAGAAGAATTCTCTAAGACATAA 448114 Query 65219 CCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAAATGCAGAATACAAT 65278 || ||||||| ||| ||| || ||| | ||||| | || || | || | ||| Sbjct 448113 CCTGAGAATTGAGAAACCTTTTCTTGCGTAGCAAAATTTCTCTTGAAAGAGAAAAAAAAT 448054 Query 65279 ATTTTCC 65285 ||||||| Sbjct 448053 ATTTTCC 448047 >seq105000 Length=241562 Score = 89.7 bits (98), Expect = 2e-13 Identities = 260/391 (66%), Gaps = 17/391 (4%) Strand=Plus/Minus Query 64927 CATCGGAATAATTGGTGCATAAAAGATAGGCTCAACAATGAGACCATCATCATCCAAATA 64986 ||| ||||||||||| |||| | | ||||||| | | |||| |||| ||| || Sbjct 227662 CATTGGAATAATTGGCACATACCACGTTGGCTCAATTTTTTGGCCATATTCATTCAAGTA 227603 Query 64987 CTTCAAAATGGCATCATCCTCTTTTGGAAATATAGAACGA-GTTATTTT----ATTCAAT 65041 | ||| | ||||||| | |||||| || | |||| | |||||| || || Sbjct 227602 GTCCAAGAGTACATCATCATATTTTGGGAACA-AGAAGCATGTTATTGGTGACATGCATG 227544 Query 65042 TGAGTATAAATATATCTTTCGGATGCGTGGTCTTGTCCAGTTCG---TCGTGTTCCAAAC 65098 ||| ||| ||||| ||| ||| || |||| |||| | || || ||||| Sbjct 227543 TGA----AAACATATCGAGCGGTTGCATGATCTTTTCCACCCTGGGCTCTGGTACCAAAT 227488 Query 65099 TGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCG 65158 || ||| ||| | | ||||| ||||| |||| ||||| || |||||||| Sbjct 227487 TGCCCAAGTGGAGCAAGGAGGTTAATGTTGTTACTTCCAACAAAATGTTGTGCCATTCCA 227428 Query 65159 ATAATTGCTGCATTTAA-ACTC-GCTTCACCGTGATGATATCCTGAATGTTCAGAGACAT 65216 ||||||| ||| || |||| |||| ||||||||| || | ||||| || |||| | Sbjct 227427 ATAATTG-TGCTAGCAAGACTCTGCTT-ACCGTGATGGTAAGCAGAATGCTCTGAGATGT 227370 Query 65217 ATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAAATGCAGAATACA 65276 | || ||||||||||| ||| || ||| ||||| | || || | || ||| Sbjct 227369 AACCTGAGAATTGAGCAACCTTTTCTTGCGTAACAAAATTTCTCTTGAAAGAGCAAAACA 227310 Query 65277 ATATTTTCCGTAAACTAATTTTCAATCCATC 65307 ||||||||| | | | |||||| ||||| Sbjct 227309 ATATTTTCCTTTTCCCTAGTTTCAAACCATC 227279 >seq312239 Length=56999 Score = 86.0 bits (94), Expect = 3e-12 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 65120 TTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAA-ACT 65178 ||||||||||| |||| ||||| || ||||||| ||||||| ||| ||| ||| Sbjct 35796 TTAATATTGTTACTTCCAACAAAATCTTGTGCCATTCAAATAATTG-TGCTAGTAAGACT 35738 Query 65179 CGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTT 65238 | ||||||||||| || ||||| || ||||||||||| ||||||| ||| || Sbjct 35737 CTGCTCACCGTGATGGTAAGAAGAATGCTCTGAGACATATCCTGATAATTGAGTAACCTT 35678 Query 65239 TATTTCCGT-TGTTAAATTCTTTTTAAATGCAGAATACAATATTTTCCGTAAACTAATTT 65297 | || ||| ||||||| || ||| | || |||||||||| | | || | || Sbjct 35677 TGCTTGCGTAAAAAAAATTCTCTTGAAA-GAGCAAAACAATATTTTTCTTTTCCTTAGTT 35619 Query 65298 TCAATCCATC 65307 |||| ||||| Sbjct 35618 TCAAACCATC 35609 >seq77569 Length=255900 Score = 86.0 bits (94), Expect = 3e-12 Identities = 252/384 (66%), Gaps = 7/384 (2%) Strand=Plus/Minus Query 64928 ATCGGAATAATTGGTGCATAAAAGATAGGCTCAACAATGAGACCATCATCATCCAAATAC 64987 || ||||||||||| |||| | | ||||||| | | ||||| |||| ||| || Sbjct 69800 ATTGGAATAATTGGCACATACCACGTTGGCTCAATTTTTTGGCCATCTTCATTCAAGTAG 69741 Query 64988 TTCAAAATGGCATCATCCTCTTTTGGAAATATAGAACGAGTTATTTTATTCAATTGAGTA 65047 | ||| | ||||||| |||||||| |||| ||| | || | || | | || | Sbjct 69740 TCCAAGAGTACATCATCATCTTTTGGGAATAG-GAA-GTGTGCTATTGGTGACATGCATG 69683 Query 65048 T--AAATATATCTTTCGGATGCGTGGTCTTGTCCAGTTCG---TCGTGTTCCAAACTGAC 65102 | ||||||||| || ||| || |||| || || | || || ||||| | | Sbjct 69682 TGAAAATATATCAAGCGCTTGCATGATCTTTTCTAGCCTGGGCTCTGGTACCAAATTTCC 69623 Query 65103 CATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAA 65162 || ||| | | | ||||| ||||| |||| ||||| || |||||||| |||| Sbjct 69622 CAAGTGGAACAAGGAGGTTAATGTTGTTACTTCCAACAAAATCTTGCGCCATTCCAATAA 69563 Query 65163 TTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCAC 65222 || || | |||| ||| ||||||| || | ||||| || |||| || || Sbjct 69562 TTTTGTTATAAAGACTCTGCTCATCGTGATGGTAATCAGAATGCTCTGAGATGTAACCCA 69503 Query 65223 TAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAAATGCAGAATACAATATTT 65282 ||||||||||| |||| || || ||||| | || || | || ||||||||| Sbjct 69502 AGAATTGAGCAACCTTTACTTGTGTAACAAAATTTCTCTTGAAAGAGCAAAACAATATTT 69443 Query 65283 TCCGTAAACTAATTTTCAATCCAT 65306 ||| | | | |||||| |||| Sbjct 69442 TCCTTTTCCCTAGTTTCAAACCAT 69419 >seq208720 Length=487249 Score = 84.2 bits (92), Expect = 1e-11 Identities = 266/405 (66%), Gaps = 18/405 (4%) Strand=Plus/Plus Query 64913 CCATTTATTAAAATCATCGGAATAATTGGTGCATAAAAGATAGGCTCAACAATGAGACCA 64972 ||| ||| || | ||| |||||||||||| |||| | | ||||||| | | ||| Sbjct 338290 CCAGTTACAAAGACCATTGGAATAATTGGTACATACCACGTTGGCTCAATTTTTTGGCCA 338349 Query 64973 TCATCATCCAAATACTTCAAAATGGCATCATCCTCTTTTGGAAATATAGAACGA-GTTAT 65031 || |||| ||| || | ||| | ||||||| | |||||| || | |||| | ||||| Sbjct 338350 TCTTCATTCAAGTAGTCCAATACTACATCATCATATTTTGGGAACA-AGAAGCATGTTAT 338408 Query 65032 TTT---ATTCAATTGAGTATAAATATATCTTTCGGATGCGTGGTCTTGTCCAGTTCG--- 65085 | || || ||| ||| || || || ||| || |||| |||| | | Sbjct 338409 TGGTACATGCATGTGA----AAAAATGTCGAGCGCTTGCATGATCTTTTCCACCTTGGGC 338464 Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145 || || ||||| || ||| ||| | | ||||| ||||| |||| ||||| Sbjct 338465 TCTAGTACCAAATTGCCCAAGTGGAGCAAGGAGGTTAATGTTGTTACTTCCAAAAAAATC 338524 Query 65146 CTGAGCCATTCCGATAATT--GCT-GCATTTAAACTCGCTTCACCGTGATGATATCCTGA 65202 || |||||||| |||||| ||| ||| | |||| ||||| ||||| || | || Sbjct 338525 TTGTGCCATTCCAATAATTTTGCTAGCA---AGACTCTGCTCACCATGATGGTAAGCAGA 338581 Query 65203 ATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTT 65262 ||| | |||| || || || |||||||| ||| || ||| ||||| | || Sbjct 338582 ATGAACTAAGACGTAACCCAAGAACTGAGCAACCTTTGCTTGCGTAACAAAATTTCTCTT 338641 Query 65263 AAATGCAGAATACAATATTTTCCGTAAACTAATTTTCAATCCATC 65307 || | || |||||||||||| | | | |||||| ||||| Sbjct 338642 GAAAGAGTAAAACAATATTTTCCTTTTCCCTAGTTTCAAACCATC 338686 >seq110573 Length=169761 Score = 84.2 bits (92), Expect = 1e-11 Identities = 237/359 (66%), Gaps = 5/359 (1%) Strand=Plus/Minus Query 64931 GGAATAATTGGTGCATAAAAGATAGGCTCAACAATGAGACCATCATCATCCAAATACTTC 64990 ||||||||||| |||| | | ||||||| | | ||||| |||| ||| || || Sbjct 44735 GGAATAATTGGCACATACCACGTTGGCTCAATTTTTTGGCCATCTTCATTCAAGTAGTTG 44676 Query 64991 AAAATGGCATCATCCTCTTTTGGAAATATAGAACGAGTTATTTTATTCAATTGAGTATAA 65050 || | ||||||| |||||||| || | | | |||||| || | || || Sbjct 44675 AAGAGTACATCATCATCTTTTGGGAACAATAAGCATGTTATTGGTGACATGTATGTGAAA 44616 Query 65051 ATATATCTTTCGGATGCGTGGTCTTGTCCAG--TTCG-TCGTGTTCCAAACTGACCATTT 65107 | ||||| || ||| || |||| |||| | | || || ||||| | ||| | Sbjct 44615 ACATATCAAGCGTTTGCATGATCTTTTCCACCCTAAGCTCTGGTACCAAATTTCCCAAGT 44556 Query 65108 GGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCT 65167 || | | | ||||| ||||| |||| ||||| || |||||||| ||||||| | Sbjct 44555 GGAGTAAGGAGGTTAATGTTGTTACTTCCAACAAAATCTTGTGCCATTCCAATAATTG-T 44497 Query 65168 GCATTTAA-ACTCGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAA 65226 || || |||| ||| | ||||| || ||||| || |||||||| || || Sbjct 44496 GCTAGAAAGACTCTGCTCAACATGATGGTAAGTAGAATGCTCTGAGACATAACCCAGGAA 44437 Query 65227 TTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAAATGCAGAATACAATATTTTCC 65285 ||||||||| ||| || | | ||||| |||| || | || |||||||||||| Sbjct 44436 TTGAGCAACCTTTGCTTGCATAACAAAATTTCTTTTGAAAGAGAAAAACAATATTTTCC 44378 >seq43890 Length=1259305 Score = 84.2 bits (92), Expect = 1e-11 Identities = 254/383 (66%), Gaps = 17/383 (4%) Strand=Plus/Minus Query 64913 CCATTTATTAAAATCATCGGAATAATTGGTGCATAAAAGATAGGCTCAACAATGAGACCA 64972 ||||||| | | ||| ||||||||||| ||| | | ||||||| | | ||| Sbjct 1103551 CCATTTACAAGGACCATTGGAATAATTGGCATATACCATGTTGGCTCAATTTTTTGGCCA 1103492 Query 64973 TCATCATCCAAATACTTCAAAATGGCATCATCCTCTTTTGGAAATATAGAAC-GAGTTAT 65031 | |||| ||| || | ||| | ||||||| |||||||| || | |||| | ||||| Sbjct 1103491 TGTTCATTCAAGTAGTCCAATAGTACATCATCATCTTTTGGGAACA-AGAAGTGTGTTAT 1103433 Query 65032 TT----TATTCAATTGAGTATAAATATATCTTTCGGATGCGTGGTCTTGTCCAGTTCG-- 65085 | || || ||| ||| ||||| || || || |||| |||| | Sbjct 1103432 TGGTGATAGGCATGTGA----AAACATATCGAGCGCTTGGATGATCTTTTCCACCCTGGG 1103377 Query 65086 -TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAAT 65144 || || ||||| | ||| ||| | | ||||||||||| |||| ||||| Sbjct 1103376 CTCTGGTACCAAATTTCCCAAGTGGAGCAAGGAGGTTAATATTGTTACTTCCAACAAAAT 1103317 Query 65145 TCTGAGCCATTCCGATAATTGCTGCATTTAA-ACTCGCTTCACCGTGATGATATCCTGAA 65203 || |||||||| ||||||| ||| ||| |||| |||| |||||| || | ||| Sbjct 1103316 CTTGTGCCATTCCAATAATTG-TGCTAGTAAGACTCTTCTCACTGTGATGGTAAGCAGAA 1103258 Query 65204 TGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATT-CTTTTT 65262 || || |||| ||| || ||||||| ||| ||| || ||| ||||| || || Sbjct 1103257 TGCTCTGAGATATAACCTGAGAATTGAGAAACCTTTGCTTGCGTAACAAAATTTCTCTTG 1103198 Query 65263 AAATGCAGAATACAATATTTTCC 65285 ||| |||| |||||||||||| Sbjct 1103197 AAAGAGAGAA-ACAATATTTTCC 1103176 >seq114530 Length=296417 Score = 82.4 bits (90), Expect = 3e-11 Identities = 120/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 65120 TTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGC-ATTTAAACT 65178 ||||| ||||| |||| ||||| || |||||||| ||||||| ||| | | ||| Sbjct 191990 TTAATGTTGTTACTTCCAACAAAATATTGTGCCATTCCAATAATTG-TGCTAGCCAGACT 192048 Query 65179 CGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTT 65238 | ||||| ||||| || | ||||| || |||||||| || ||||||||||| || Sbjct 192049 CTGCTCACCATGATGGTAAGCAGAATGCTCTGAGACATAACCCAAGAATTGAGCAACCTT 192108 Query 65239 TATTTCCGTTGTTAAATTCTTTTTAAATGCAGAATACAATATTTTCC 65285 | || ||| | ||||| | || || | || |||||||||||| Sbjct 192109 TTCTTGCGTAATAAAATTTCTCTTGAAAGAGAAAAACAATATTTTCC 192155 >seq49990 Length=47182 Score = 82.4 bits (90), Expect = 3e-11 Identities = 120/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 65120 TTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAA-ACT 65178 ||||| ||||| |||| ||||| || |||||||| ||||||| ||| | || ||| Sbjct 9474 TTAATGTTGTTACTTCCAAAAAAATCATGTGCCATTCCAATAATTG-TGCTATCAAGACT 9532 Query 65179 CGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTT 65238 | ||||| ||||| || | ||||| || |||||||| || ||||||||||| || Sbjct 9533 CTGCTCACCATGATGGTAAGCAGAATGCTCTGAGACATAACCCGAGAATTGAGCAACCTT 9592 Query 65239 TATTTCCGTTGTTAAATTCTTTTTAAATGCAGAATACAATATTTTCC 65285 | || ||| ||||| | || || | || |||||||||||| Sbjct 9593 TGCTTGCGTAAAAAAATTTATCTTGAAAGAGAAAAACAATATTTTCC 9639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 223463616832050