Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq562416 96.9 2e-15 seq8179 96.9 2e-15 seq5369 96.9 2e-15 seq108016 87.8 1e-12 seq23608 87.8 1e-12 seq12734 87.8 1e-12 >seq562416 Length=95391 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| ||||| |||||||| || ||| || | || ||||||||| | Sbjct 18519 AATGCAGATCTTTGTCAAAACCCTTACTGGCAAGACTATCACTCTGGAAGTCGAAAGCTC 18578 Query 27849 CGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | | ||||| ||||| ||||| ||||| ||||| ||||| || Sbjct 18579 TGACACTATTGACAAT--GTCAAGGCTAAAATTCAGGACAAGGAAGGGATTCCGCCCGAT 18636 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965 ||||| || | || ||||| ||||| || | || |||| ||||| |||| ||||||| Sbjct 18637 CAGCAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAGGACGGACGCACTCTTG-CCGATTA 18695 Query 27966 CAACATCCAAAAAGA 27980 ||||||||| || || Sbjct 18696 CAACATCCAGAAGGA 18710 Score = 89.7 bits (98), Expect = 3e-13 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| || ||||| || || ||| | || ||||||||| | Sbjct 53275 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACACTAGAAGTCGAAAGCTCT 53334 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||||| ||||| ||||| |||| || | Sbjct 53335 GACACAATTGACAAT--GTGAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCCGATC 53392 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| |||| |||||||| |||||||| | || || | ||||| |||| |||||||| Sbjct 53393 AGCAGAGGTTGATTTTTGCTGGAAAACAGCTCGAGGATGGACGCACTCTTG-CCGATTAC 53451 Query 27967 AACATCCAAAAAGA 27980 |||||||| || || Sbjct 53452 AACATCCAGAAGGA 53465 Score = 89.7 bits (98), Expect = 3e-13 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| || ||||| || || || | || |||||||| | Sbjct 53503 ATGCAGATCTTTGTTAAAACCCTCACTGGCAAGACCATCACTCTGGAAGTCGAAAGTTCT 53562 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| ||||| ||||| ||||| |||||| |||| || | Sbjct 53563 GATACAATTGACAAT--GTCAAGGCCAAAATTCAAGACAAGGAAGGTATTCCACCCGACC 53620 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| || | |||||||| |||||||| | || |||| ||||| |||| |||||||| Sbjct 53621 AGCAGAGGCTGATTTTTGCAGGAAAACAGCTTGAGGACGGACGCACTCTTG-CCGATTAC 53679 Query 27967 AACATCCAAAAAGA 27980 |||||||| || || Sbjct 53680 AACATCCAGAAGGA 53693 >seq8179 Length=775255 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || || || ||||| || ||||| || || || | || ||||||||| | Sbjct 377719 AATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACTCTGGAAGTCGAAAGCTC 377778 Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| ||| ||||| ||||| ||||| ||||| ||||| |||| || Sbjct 377779 TGACACGATTGACAAT--GTCAAGGCTAAAATCCAGGACAAGGAAGGGATTCCACCCGAC 377836 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965 ||||| || | || |||||||| |||||| |||| |||| ||||| |||| ||||||| Sbjct 377837 CAGCAGAGGCTGATATTTGCCGGTAAACAACTGGAGGACGGACGCACTCTTG-CCGATTA 377895 Query 27966 CAACATCCAAAAAGA 27980 ||||||||| || || Sbjct 377896 CAACATCCAGAAGGA 377910 >seq5369 Length=633823 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| |||||||||||| ||||| | || ||||| ||| | Sbjct 288011 ATGCAGATTTTTGTGAAAACCCTTACTGGGAAAACCATTACTTTGGAGGTCGAGAGCTCA 287952 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | ||||| | ||| || || ||||| ||||| || ||| | || || | Sbjct 287951 GATACGATTGATAAT--GTGAAGGCTAAAATCCAGGACAAGGAGGGTATCCCACCAGATC 287894 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| |||||||| || || || |||| || | || | | || | ||||| | Sbjct 287893 AGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGGCGTACCCTGGCTGATTATA 287834 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||| |||||| ||| |||| |||| Sbjct 287833 ACATCCAGAAAGAGTCAACTCTGCACCTGGT 287803 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG--CA 27847 ||||| |||||||||||||| |||||||||||| |||||| | || || || || || Sbjct 370233 ATGCAGATTTTTGTGAAAACCCTTACTGGGAAAACCATTACATTGGAGGTGGAGAGTTCA 370174 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||||| | ||| || || || || ||||| || ||| | || ||| | Sbjct 370173 GATACGATTGATAAT--GTGAAGGCTAAGATTCAGGACAAGGAGGGTATCCCTCCGGACC 370116 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | |||||||| || || || |||| || | ||| | | || | ||||| | Sbjct 370115 AGCAAAGGCTGATTTTTGCTGGTAAGCAGCTGGAAGATGGACGTACCCTGGCTGATTATA 370056 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||| ||| |||| |||| | || | ||||| || Sbjct 370055 ACATCCAGAAAGAGTCAACTCTGCACCTGGTGCTCCGACTTCGTGGTGG 370007 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG--CA 27847 ||||| |||||||||||||| |||||||||||| ||||| | || || || || || Sbjct 231984 ATGCAGATTTTTGTGAAAACCCTTACTGGGAAAACCATTACTTTGGAGGTGGAGAGTTCA 231925 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| || || || || ||||| || ||| | ||| || | Sbjct 231924 GATACAATTGATAAT--GTGAAGGCTAAGATCCAGGACAAGGAGGGTATCCCGCCAGATC 231867 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| || || || |||| || | || | | || | ||||| | Sbjct 231866 AGCAAAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGGCGTACCCTGGCTGATTATA 231807 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||| |||||| ||| |||| |||| Sbjct 231806 ACATCCAGAAAGAGTCAACTCTGCACCTGGT 231776 >seq108016 Length=449559 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| ||||| || ||||| || ||||| | || || || ||| | Sbjct 325264 ATGCAGATTTTTGTTAAAACCCTCACTGGCAAGAAAATTACTTTGGAAGTTGAGAGCTCG 325323 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| || || ||||||||||| |||| || | Sbjct 325324 GACACCATTGATAAT--GTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACC 325381 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| |||| ||| ||||||| ||| || || || | | |||| |||| |||| Sbjct 325382 AGCAACGACTAATATTTTCCGGAAAGCAACCTGAAGATGACAGAACCTTGGCCGACTACA 325441 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 | |||||||| ||| || |||||||||| Sbjct 325442 ATATCCAAAAGGAGTCGACCCTGCATTTGGT 325472 >seq23608 Length=1529151 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| ||||| || ||||| || || || | || |||||||| | Sbjct 16928 AATGCAGATCTTTGTTAAAACCCTCACTGGCAAGACCATCACTCTGGAAGTCGAAAGTTC 16987 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || ||||| ||||| ||||| ||||| ||||| |||| || Sbjct 16988 TGATACAATTGACAAT--GTCAAGGCCAAAATTCAAGACAAGGAAGGCATTCCACCCGAC 17045 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 || || || | ||||||||||||||||| | || |||| ||||| |||| ||||||| Sbjct 17046 CAACAGAGGCTGATTTTTGCCGGAAAACAGCTCGAGGACGGACGCACTCTTG-CCGATTA 17104 Query 27966 CAACATCCAAAAAGA 27980 ||||||||| || || Sbjct 17105 CAACATCCAGAAGGA 17119 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| ||||| || ||||| || || || | || ||||||||| | Sbjct 16472 AATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACTCTAGAAGTCGAAAGCTC 16531 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || ||||| || || ||||| ||||| ||||| |||| || Sbjct 16532 TGACACAATTGACAAT--GTGAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCCGAC 16589 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965 ||||| |||| || ||||| |||||||| | || || | ||||| |||| ||||||| Sbjct 16590 CAGCAGAGGTTGATCTTTGCTGGAAAACAGCTCGAGGATGGACGCACTCTTG-CCGATTA 16648 Query 27966 CAACATCCAAAAAGA 27980 ||||||||| || || Sbjct 16649 CAACATCCAGAAGGA 16663 >seq12734 Length=494798 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || || || || || ||| | || || || ||| | Sbjct 183265 ATGCAGATCTTTGTGAAAACCCTCACCGGTAAGACGATAACATTGGAAGTGGAGAGCTCA 183324 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || ||| || || ||||| ||||| ||||| ||| | Sbjct 183325 GATACCATCGACAAT--GTGAAAGCTAAGATCCAGGACAAGGAAGGGATTCCGCCGGACC 183382 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || |||| |||||||||||||| |||| || | || | |||| | || |||| Sbjct 183383 AGCAGCGTCTAATATTTGCCGGAAAACAGCTGGAAGATGGCCGAACCTTGGCAGACTACA 183442 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || ||||| || || |||||| | || | |||||| | || || Sbjct 183443 ATATTCAAAAGGAATCTACCTTGCATCTTGTCCTCCGTTTGAGGGGTGG 183491 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || ||||| ||||| ||||| || || || || | || || || ||| Sbjct 183034 AAGATGCAGATCTTTGTTAAAACCCTTACCGGCAAGACAATCACTCTCGAGGTTGAGAGC 183093 Query 27847 ACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| | | ||||| || || || || ||||| ||||| |||| | Sbjct 183094 TCTGACACTATTGACAAT--GTAAAGGCGAAGATCCAGGACAAGGAAGGCATTCCCCCTG 183151 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || |||||||||||||| |||| |||| || | | || |||||| Sbjct 183152 ACCAGCAGCGTCTGATATTTGCCGGAAAACAGCTGGAAGACGGCCGTACCCTGGCCGATT 183211 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| || || ||| ||||| |||| | ||| || | || ||| Sbjct 183212 ACAACATCCAGAAGGAATCCACGCTGCATCTGGTCCTCCGTCTGAGGGGTGGC 183264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337416407834919