Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq5713 102 6e-17 seq25406 91.5 1e-13 seq97389 87.8 1e-12 seq136844 82.4 6e-11 >seq5713 Length=447580 Score = 102 bits (112), Expect = 6e-17 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 || ||||| | ||||| ||||| |||||||||||||||||||| |||| ||| | | Sbjct 301724 CTCAACACAAGATGCAAGGTTGACTCTTTTTGAATATTGTAATCTGCCAGAGTGCGGCCA 301783 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 |||||||||||||||| |||| |||| || ||| ||||| | | | |||||| || Sbjct 301784 TCTTCCAATTGTTTGCTCGCAAATATCAGATGTTGCTGGTCGAGCGAGATCCCTTCTCTG 301843 Query 101144 TCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAA 101201 || |||||| ||||||| | | | || || || | || ||| | | | | Sbjct 301844 TCCTAGATTTTTGCCTTCACATTGTCGATTGTATCACTG--CTTTCAACTTCTAAGCTTA 301901 Query 101202 TAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 | || ||||||||||| || || | || || ||||| Sbjct 301902 TGGTCTTGCCCGTCAAGGTCTTTACGAAGATCTGCAT 301938 >seq25406 Length=689335 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 101036 TGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGT 101095 ||||| ||||| ||||| ||||| |||||||| |||| ||| | |||||||| ||| Sbjct 108430 TGCAAGGTTGACTCTTTCTGAATGTTGTAATCTGCCAGAGTGCAGCTATCTTCCATCTGT 108371 Query 101096 TTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTC 101145 ||||||||| |||| || | ||||||||| || | ||||||||||| Sbjct 108370 TTGCCCGCAAATATCAGACATTGTTGGTCGGGTGGGATCCCTTCTTTGTC 108321 >seq97389 Length=113754 Score = 87.8 bits (96), Expect = 1e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 101036 TGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGT 101095 ||||| ||||||| ||| |||||||||||||| |||| ||| | |||||| || ||| Sbjct 16107 TGCAAGGTTGATTGTTTCTGAATATTGTAATCCGCCAGAGTGCGGCTATCTTCGAACTGT 16166 Query 101096 TTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTT 101141 ||||||||| | || || | ||||||||| | || | ||||||| Sbjct 16167 TTGCCCGCAAACATCAGACGTTGTTGGTCGAGCGGGATACCTTCTT 16212 >seq136844 Length=297809 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||| | |||||| ||||| |||||||||||||| |||| |||| | ||| ||| Sbjct 119826 ACCAGGTGTAGAGTTGACTCTTTCTGAATATTGTAATCAGCCAGAGTTCTCCCATCCTCC 119885 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 || || ||||| ||| | || | | ||| ||||| || | ||| || || || | Sbjct 119886 AACTGCTTGCCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATGCCCTCCTTATCTTGA 119945 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 || || ||||||| | | || |||| ||| | || | |||||||||||| Sbjct 119946 ATCTTAGTCTTCACATTATCGATTGTATCTGAAGACTCTACCTCAAGGGTAATAGTTTTA 120005 Query 101210 CCCGTCAATG 101219 || |||| || Sbjct 120006 CCAGTCACTG 120015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 388426188231123