Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq56275 100 4e-16 seq16500 100 4e-16 seq570714 91.5 2e-13 seq171456 89.7 7e-13 seq852351 87.8 2e-12 seq369028 84.2 3e-11 seq97185 84.2 3e-11 seq73847 84.2 3e-11 seq19246 84.2 3e-11 seq14209 84.2 3e-11 >seq56275 Length=114807 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| ||||||| || || |||||||||||||||||||| | || | | || Sbjct 25676 AGTTCCACCATTAAACAAAGTTGGAGATGCATGCGTAAACCAACGCTGTGACATCAAATG 25617 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 || || | ||||| ||||| ||||| | ||| |||||||| || | || | ||||| Sbjct 25616 ATAAGTCTTGATAGCAGATTCGATGTCATCCTTG-TGAATTCCCACAGAAACCCTCATCA 25558 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||||||| ||||| || || || ||| | ||| |||||||| || | |||| Sbjct 25557 ACATATGTTGAGGCCTCTCCACAACAACCCCATTCAATTTTAACAAGTAGGACCTCTCCA 25498 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | || || || ||||| |||| ||| ||| || || || || || || Sbjct 25497 ATGTCTTGAAGCCAAAGTAGTCATATTCAAAATCCCTATCATAGATTAT 25449 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||||| ||| | || || | |||| | || | ||||||||| | |||||| Sbjct 26228 CCTCCTTGATCTACATAGCGAGCAGTATCATTAAACACACGCAACATTGGCACAATACCA 26169 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| |||||||||||| || ||||| ||| ||||||||| || || Sbjct 26168 TTTGATGTGCCATTTGTTCCACGTATGTAACTATTTGTTGAACGAATATTATGGATCGAA 26109 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || |||||||| || || | ||| || ||| | ||||| || ||| Sbjct 26108 ACTCCAATGCCTCCTGCTGATTTGCTAATCACAGCACATTCTTTGAGGGTATCATAAATA 26049 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || || || |||||| |||| | |||||| |||||| Sbjct 26048 CCTTCAATGCTATCATCCTTCATACAGATAAGAAAGCAGCTA 26007 >seq16500 Length=780930 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||||| || || |||||||||||||||||||| | |||| | || Sbjct 148924 AGTTCCAGCATTAAACAAAGTTGGAGATGCATGCGTAAACCAACACTATGAAATCAAATG 148983 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 || || | ||||| ||||| ||||| | ||| || |||| || | || | ||||| Sbjct 148984 ATAAGTCTTGATAGCAGATTCAATGTCATCCTTG-TGGATTCTCACAGAAACCCTCATCA 149042 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||||||| ||||| || || || | ||| | ||| |||||||| | | |||| Sbjct 149043 ACATATGTTGAGGCCTCTCCACAATAACCCCATTCAATTTTAACAAGTAGTACCTCTCCA 149102 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | || || || ||||| |||| ||| ||| || || || || || || Sbjct 149103 ATGTCTTGAAGCCAAATTAGTCATATTCAAAATCCCTATCATAGATTAT 149151 >seq570714 Length=178535 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| |||| || ||| | ||||| | |||| ||| | ||||||||| | ||| || Sbjct 58074 CCTCCTTGATATACATAGCGAGCGGTATCATTA--AACACACAACATTGGCACAATGCCA 58131 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| |||||||||||| || ||||| ||| ||||||||| || || Sbjct 58132 TTTGATGTGCCATTTGTTCCACGTATGTAACTATTTTTTGAACGAATATTATGGATCGAA 58191 Query 78279 ATCCCTATTCCTCCTGC-CATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || |||||||| || || | || | | | || ||| | ||||| || || Sbjct 58192 ACTCCAATGCCTCCTGCTGATTTTCTA-ATCACATCACATTCTTTAAGGGTATCATAAAT 58250 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||| || || || |||||| |||| | |||||| |||||| Sbjct 58251 ACCTTCAATGCTATCATCCTTCATACAGATAAGAAAGCAGCTA 58293 >seq171456 Length=485218 Score = 89.7 bits (98), Expect = 7e-13 Identities = 160/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| ||||||| || | ||||||||||||||||||| | || || | | ||| Sbjct 286911 AGTTCCACCATTAAACAAACTTAGAGATGCATGCGTAAACCAATGTTGTGACATCAAATT 286852 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATC- 78515 || || | |||| ||||| ||||| | ||| || ||||||| | || | |||| Sbjct 286851 ATAAGTCTTGATAGTAGATTCAATGTCATCCTTG-TGGATTCCTATAGAAACCCTCATCT 286793 Query 78516 AACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCC 78575 |||||||| | ||| ||||| || ||| | ||| |||||||| || | ||| Sbjct 286792 AACATATGTTTAGGCCTTTCCACAACAACCCCATTCAATTTTAACAAGTAGGACCTCTCC 286733 Query 78576 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 || || || || ||||| |||| ||| ||| || || || || || || Sbjct 286732 AATGTCTTGAAGCCAAATTAGTCATATTCAAAATCGCTATCATAGATTAT 286683 >seq852351 Length=70276 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| ||||||| || || |||||||||||||||||||| || || | | || Sbjct 35397 AGTTCCACCATTAAACAAAGTTGGAGATGCATGCGTAAACCAACGTTGTGACATCAAATG 35456 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 || || | ||||| ||||| ||||| | ||| || ||||| || || | ||||| Sbjct 35457 ATAAGTCTTGATAGCAGATTCAATGTCATCCTTG-TGGATTCCCACATAAACCCTCATCA 35515 Query 78517 ACATATGCTGAGGTCTTTC---AACCGTCTTATTATTTATTTTCAACAAGTATGATTTTT 78573 ||||||| ||||| || || ||| | ||| | ||| |||||||| || | | Sbjct 35516 ACATATGTTGAGGCCTCTCCATAACAACC---CCATTCAATTTTAACAAGTAGGACCTCT 35572 Query 78574 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 |||| || || || ||||| |||| || ||| || || || || || || Sbjct 35573 CCAATGTATTGAATCCAAAGTAGTCACATTCAAAATCCCTATCATATATTAT 35624 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| | ||||| ||| || | | |||| | || ||||||||| | |||||| Sbjct 34843 CCTCCTTAATCTACATAGTGAGCAATATGATTAAACACATGCAACATTGGCACAATACCA 34902 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| |||||||||||| || ||||| ||| ||||||||| || || Sbjct 34903 TTTGATGTGCCATTTGTTCCATGTATGTAACTATTTGTTGAACGAATATTATGGATTGAA 34962 Query 78279 ATCCCTATTCCTCCTGC-CATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || ||||||||||| || || | || | | | || ||| | ||||| || || Sbjct 34963 ACTCCAATTCCTCCTGCTGATTTTCTA-ATCACAACACATTTTTTGAGGGTATCATAAAT 35021 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||| || || || |||||| |||| || |||||| || ||| Sbjct 35022 ACCTTCAATGCTATCATCCTTCATACAAATAAGAAAGCAACTA 35064 >seq369028 Length=352451 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 77141 CAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 77200 ||| ||||| | | |||||||| |||||| ||||| | | ||||| || || | Sbjct 61462 CAACACTCTTCTGCTATAAATATTTGAGGTATAAGGTTCAAAGCACTCATTATTCCCAAG 61521 Query 77201 AATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 77260 ||||||| ||| ||||||||||||||||| || || | | | ||||| | |||||| Sbjct 61522 AATTTGACTAGTTGAAGCAGTTGGCATAGGAGCAACAAGAAGAGAGTTTCTCACACCATG 61581 Query 77261 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCA 77320 || | || || || |||| |||||||||| ||| ||||| | ||| |||| Sbjct 61582 CTTTGTTATCTTGTCCCTTAGCCCAGCCCAATCCCAACGATTGGAAGGCGCTACACCCCA 61641 Query 77321 AAGATCGTATTGTAGAATTCC 77341 | || ||| || ||||| Sbjct 61642 CATGTCTGGTTGAAGTATTCC 61662 >seq97185 Length=778803 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||| || || |||||||||||||||||||| || || | | || Sbjct 83983 AGTTCCACCATTAAGCAAAGTTGGAGATGCATGCGTAAACCAACGTTGTGACATCAAATG 84042 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 || || | ||||| ||||| || | ||| || ||||| || || | |||||| Sbjct 84043 ATAAGTCTTGATAGCAGATTCAATTCATCCTTG-TGGATTCCCACATAAACCCTCATCAA 84101 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 |||||| ||||| || || || ||| | ||| |||||||| ||| | ||||| Sbjct 84102 CATATGTTGAGGCCTCTCCACAACAACCCCATTCAATTTTAACAAGTACGATCTCTCCAA 84161 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 || || || ||||| || | ||| ||| || || || || || || Sbjct 84162 TGTCTTGAAGCCAAAGTATTCATATTCAAAATCCCTATCATAGATTAT 84209 >seq73847 Length=1089629 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| ||||||| ||||| ||||||||| |||||||||| | | || | | || Sbjct 999247 AGTTCCACCATTAAACAATGTTGGAGATGCACGCGTAAACCAATGCTGTGACATCAAATG 999188 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 || || | ||| | ||||| ||||| | ||| || ||||| | | || | ||||| Sbjct 999187 ATAAGTCTTGATAACAGATTCAATGTCATCCTTG-TGGATTCCCATAGAAACCCTCATCA 999129 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||||||| ||||| || || || ||| | ||| |||||||| || | |||| Sbjct 999128 ACATATGTTGAGGCCTCTCCACAACAACCCCATTCAATTTTAACAAGTAGGACCTCTCCA 999069 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACA 78629 | | || || ||||| |||| ||| ||| || || || | || ||| || Sbjct 999068 ATGCCTTGAAGCCAAAGTAGTCATATTCAAAATCCCTGTCAGAGATTATATCA 999016 >seq19246 Length=439232 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| |||| || ||| | || | | |||| | || | ||||||||| | ||| || Sbjct 410787 CCTCCTTGATATACATAGCGAGCAATATCATTAAACACACACAACATTGGCACAATGCCA 410846 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || |||||||||||||||||| || || || ||| ||||||||| || || Sbjct 410847 TTTGATGTTCCATTTGTTCCACGTATGTATCTATTTGTTGAACGAATATTATGGATCGAA 410906 Query 78279 ATCCCTATTCCTCCTGC-CATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || |||||||| || || | || | | | || ||| | ||||| || || Sbjct 410907 ACTCCAATGCCTCCTGCTGATTTTCTA-ATCACATCACATTCTTTAAGAGTATCATAAAT 410965 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||| || || || |||||| |||| | |||||| |||||| Sbjct 410966 ACCTTCAATGCTATCATCCTTCATACAGATAAGAAAGCAGCTA 411008 >seq14209 Length=330277 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| |||||||||||||||||||| ||||| || ||| || || || ||||| || | Sbjct 252040 ACAAGCAAAATCACAATGAAGACCCTCATCCCTTGAAATCAACTCATTTGAAAAAGTTAA 251981 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGC 48238 ||| ||||||| || ||||| || | ||||||||| || Sbjct 251980 ACCTGGCATTAAGCCCCGTTTCTTCAACCAAAATATGGC 251942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657737627634080