Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq56275 107 3e-18 seq570714 100 4e-16 seq73847 98.7 1e-15 seq19246 98.7 1e-15 seq86877 95.1 2e-14 seq852351 93.3 6e-14 seq369028 87.8 2e-12 seq16500 86.0 8e-12 >seq56275 Length=114807 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||||| ||| | ||||| | |||| | || | ||||||||| | ||| || Sbjct 26228 CCTCCTTGATCTACATAGCGAGCAGTATCATTAAACACACGCAACATTGGCACAATACCA 26169 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||||||| || ||||| || |||||||||| || || Sbjct 26168 TTTGATGTGCCATTTGTTCCACGTATGTAACTATTTGTTGAACGAATATTATGGATCGAA 26109 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || |||||||| ||| || | |||||| ||| | || ||||| || Sbjct 26108 ACTCCAATGCCTCCTGCTGATTTGCTAATCACAGCACATTCTTTGAGGGTATCATAAATA 26049 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || ||||||||| |||| | |||||| |||||| Sbjct 26048 CCTTCAATGCTATCATCCTTCATACAGATAAGAAAGCAGCTA 26007 Score = 86.0 bits (94), Expect = 8e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||||| || ||||||||||| || ||||| | || | | || Sbjct 25676 AGTTCCACCATTAAACAAAGTTGGAGATGCATGCGTAAACCAACGCTGTGACATCAAATG 25617 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 || || | ||| | | ||| || || | ||| |||||||| |||| || | ||||| Sbjct 25616 ATAAGTCTTGATAGCAGATTCGATGTCATCCTTG-TGAATTCCCACAGAAACCCTCATCA 25558 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||||||| ||||| | || ||| ||| | ||| |||||||| || | |||| Sbjct 25557 ACATATGTTGAGGCCTCTCCACAACAACCCCATTCAATTTTAACAAGTAGGACCTCTCCA 25498 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 | || || || ||||| |||| ||| ||| || || || || || || Sbjct 25497 ATGTCTTGAAGCCAAAGTAGTCATATTCAAAATCCCTATCATAGATTAT 25449 >seq570714 Length=178535 Score = 100 bits (110), Expect = 4e-16 Identities = 158/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| |||| || ||| | || || | |||| ||| | ||||||||| | |||||| Sbjct 58074 CCTCCTTGATATACATAGCGAGCGGTATCATTA--AACACACAACATTGGCACAATGCCA 58131 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||||||| || ||||| || |||||||||| || || Sbjct 58132 TTTGATGTGCCATTTGTTCCACGTATGTAACTATTTTTTGAACGAATATTATGGATCGAA 58191 Query 76874 AGGCCTATTCCTCCTGC-CATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || |||||||| ||||| | || | | |||| ||| | || ||||| || Sbjct 58192 ACTCCAATGCCTCCTGCTGATTTTCTA-ATCACATCACATTCTTTAAGGGTATCATAAAT 58250 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || ||||||||| |||| | |||||| |||||| Sbjct 58251 ACCTTCAATGCTATCATCCTTCATACAGATAAGAAAGCAGCTA 58293 >seq73847 Length=1089629 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||||| ||| | ||||| | |||| | || | ||||||||| | |||||| Sbjct 999800 CCTCCTTGATCTACATAGCAAGCAGTATCATTAAACACACACAACATTGGCACAATGCCA 999741 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||||||||||| || ||||| || |||||||||| || || Sbjct 999740 TTTGATGTGTCATTTGTTCCACGTATGTAACTATTTTTTGAACGAATATTATGGATCGAA 999681 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || |||||||| ||| || | | |||| ||| | || ||||| || Sbjct 999680 ACTCCAATACCTCCTGCTGGTTTTCTAATCACAACACATTCTTTGAGGGTATCATAAATA 999621 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || |||| ||| |||| | | |||||| |||||| Sbjct 999620 CCATCAATGTTATCGTCCTTCATATAGATAAGAAAGCAGCTA 999579 >seq19246 Length=439232 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| |||| || ||| | ||| | | |||| | || | ||||||||| | |||||| Sbjct 410787 CCTCCTTGATATACATAGCGAGCAATATCATTAAACACACACAACATTGGCACAATGCCA 410846 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||||||| || || || || |||||||||| || || Sbjct 410847 TTTGATGTTCCATTTGTTCCACGTATGTATCTATTTGTTGAACGAATATTATGGATCGAA 410906 Query 76874 AGGCCTATTCCTCCTGC-CATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || |||||||| ||||| | || | | |||| ||| | || ||||| || Sbjct 410907 ACTCCAATGCCTCCTGCTGATTTTCTA-ATCACATCACATTCTTTAAGAGTATCATAAAT 410965 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || ||||||||| |||| | |||||| |||||| Sbjct 410966 ACCTTCAATGCTATCATCCTTCATACAGATAAGAAAGCAGCTA 411008 >seq86877 Length=569069 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||||| ||| ||||| | |||| | || | |||||||| | |||||| Sbjct 51818 CCTCCTTGATCTACATAGTGAGCAGTATCATTAAACACACACAACATTGCCACAATGCCA 51877 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||||||| || ||||| || |||||||||| || || Sbjct 51878 TTTGATGTGCCATTTGTTCCACGTATGTAACTCTTTGTTGAACGAATATTATGGATTGAA 51937 Query 76874 AGGCCTATTCCTCCTGC-CATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || |||| ||| |||||| | || | | |||| ||| | || ||||| || Sbjct 51938 AATCCAATGCCTCTTGCTGATTTTATA-ATCACAACACATTATTTTAGGGTATCATAAAT 51996 Query 76933 GCCCTCTATACTATCATCCATCAT 76956 || || || ||||||||| |||| Sbjct 51997 ACCTTCAATGCTATCATCCTTCAT 52020 >seq852351 Length=70276 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| | ||||| ||| ||| | | |||| | || ||||||||| | ||| || Sbjct 34843 CCTCCTTAATCTACATAGTGAGCAATATGATTAAACACATGCAACATTGGCACAATACCA 34902 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||||||| || ||||| || |||||||||| || || Sbjct 34903 TTTGATGTGCCATTTGTTCCATGTATGTAACTATTTGTTGAACGAATATTATGGATTGAA 34962 Query 76874 AGGCCTATTCCTCCTGC-CATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || ||||||||||| ||||| | || | | |||| ||| | || ||||| || Sbjct 34963 ACTCCAATTCCTCCTGCTGATTTTCTA-ATCACAACACATTTTTTGAGGGTATCATAAAT 35021 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || ||||||||| |||| || |||||| || ||| Sbjct 35022 ACCTTCAATGCTATCATCCTTCATACAAATAAGAAAGCAACTA 35064 >seq369028 Length=352451 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||||||||| || ||||| |||| | | |||||| |||||| ||||| | ||||| Sbjct 62914 TTCAAATTCTTCACCCCAGCAATCAGCAAGCCCAGGAGCTTCATTGGGACAAAACAATGT 62973 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| | || |||| |||| |||||||||||| || || | ||| || |||| ||| Sbjct 62974 CCATGTAGAATTCTCCTGGACCCTTTTCATAAAGAGGTCTGGCACCCAAAGTGCAAAAAA 63033 Query 76639 TAGATCTCGGGTTCTACGTTCT 76660 |||||| || | ||| ||||| Sbjct 63034 TAGATCACGTGCTCT--GTTCT 63053 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| | || ||||||||||| | ||| || Sbjct 63458 CCACCTTGATCAACATAACGAGCAGTATCATTGAATACCCTCAACATTGGCACAATACCA 63517 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||||| ||||| |||||||| | ||||||||| ||| | || Sbjct 63518 TTCGATGTGCCATTAGTTCCTCGGATATAACTACTGGTTGCACGAATGTTATGTACTGAA 63577 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || | |||||| || ||| |||| ||||| || | || ||||| || Sbjct 63578 ACACCAAGTCCTCCAGCTGATTTGCTTATTACGGCACATTCCTTTAGAGTATCATATATC 63637 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| || |||||||| |||| || ||| || |||||| Sbjct 63638 CCCTCAATGCTATCATCTTTCATACAAACAAGGAAGCAGCTA 63679 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 75736 CAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 75795 ||| ||||||| | |||||||| |||||| ||||| | | ||||| || || | Sbjct 61462 CAACACTCTTCTGCTATAAATATTTGAGGTATAAGGTTCAAAGCACTCATTATTCCCAAG 61521 Query 75796 AATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 75855 ||||||| |||||||||||| |||||||| || || | | | ||||| | |||||| Sbjct 61522 AATTTGACTAGTTGAAGCAGTTGGCATAGGAGCAACAAGAAGAGAGTTTCTCACACCATG 61581 Query 75856 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCA 75915 || | || || || |||| |||||||||| ||| || || | ||| |||| Sbjct 61582 CTTTGTTATCTTGTCCCTTAGCCCAGCCCAATCCCAACGATTGGAAGGCGCTACACCCCA 61641 Query 75916 GAGATCGTATTGTAGAATTCC 75936 | || ||| || ||||| Sbjct 61642 CATGTCTGGTTGAAGTATTCC 61662 >seq16500 Length=780930 Score = 86.0 bits (94), Expect = 8e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| ||||||||||| || ||||||||||| || ||||| | |||| | || Sbjct 148924 AGTTCCAGCATTAAACAAAGTTGGAGATGCATGCGTAAACCAACACTATGAAATCAAATG 148983 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 || || | ||| | | ||| || || | ||| || |||| |||| || | ||||| Sbjct 148984 ATAAGTCTTGATAGCAGATTCAATGTCATCCTTG-TGGATTCTCACAGAAACCCTCATCA 149042 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||||||| ||||| | || ||| | ||| | ||| |||||||| | | |||| Sbjct 149043 ACATATGTTGAGGCCTCTCCACAATAACCCCATTCAATTTTAACAAGTAGTACCTCTCCA 149102 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 | || || || ||||| |||| ||| ||| || || || || || || Sbjct 149103 ATGTCTTGAAGCCAAATTAGTCATATTCAAAATCCCTATCATAGATTAT 149151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 675032160527040