Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20lambertiana_20[genbank_20GCA_5F001447015.2_202015-11-17] 4,253,097 sequences; 27,602,653,187 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq165262 107 2e-18 seq562416 105 5e-18 seq23608 93.3 3e-14 seq6082 93.3 3e-14 seq8179 91.5 1e-13 seq5713 91.5 1e-13 seq9751 89.7 4e-13 seq6287 87.8 1e-12 seq190644 84.2 2e-11 seq6377 82.4 6e-11 >seq165262 Length=201129 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || |||||||| ||||| ||||| || |||| || | | Sbjct 58479 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACCATCACACTGGAGGTTGAGAGCTCC 58420 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | | | | | |||||| ||| ||| ||||| ||||| |||| ||||| Sbjct 58419 GATACGATCGACAATGTAAAAGCAAAGATTCAGGACAAGGAAGGGATTCCACCTGATCAG 58360 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || |||||||| | ||| || || || |||| ||| |||| | ||||||||||| Sbjct 58359 CAGAGGCTTATATTTGCTGGTAAGCAGCTGGAGGATGGCCGAACTCTCGCCGATTATAAC 58300 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || ||||| || || | || ||||||||||| ||||| Sbjct 58299 ATCCAGAAGGAGTCTACGCTTCACCTTGTCTTGCGTCTGCGTGGTGG 58253 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || |||||||| ||||| || || || |||| || | | Sbjct 107693 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACGATCACACTGGAGGTTGAGAGCTCC 107752 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | | | | |||||| ||| ||| ||||| ||||| |||| ||||| Sbjct 107753 GATACGATCGATAATGTAAAAGCAAAGATTCAGGACAAGGAAGGGATTCCTCCTGATCAG 107812 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| || || || |||| ||| |||| | ||||||||||| Sbjct 107813 CAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGCCGAACTCTCGCCGATTATAAC 107872 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || || || ||||| || || | || ||||||||||| |||||| Sbjct 107873 ATCCAGAAGGAGTCTACGCTTCACCTCGTCTTGCGTCTGCGTGGTGGC 107920 >seq562416 Length=95391 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || |||||||| ||||| ||||| || |||| || | Sbjct 53959 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACCATCACTCTGGAGGTTGAGAGCTCT 54018 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| |||||| || || ||||| |||| ||||| Sbjct 54019 GATACGATTGATAATGTCAAAGCTAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAG 54078 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| |||| ||| ||||| |||||||| ||| ||| ||||||||||||| Sbjct 54079 CAGAGGCTCATTTTTGCTGGCAAGCAATTGGAGGATGGCCGAACCCTGGCCGATTATAAC 54138 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 | || || ||||| || || || | || ||||||||||| |||||| Sbjct 54139 GTTCAGAAGGAATCCACCCTTCACCTTGTCTTGCGTCTGCGTGGTGGC 54186 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || || ||||| ||||| ||||| || |||| || | Sbjct 18976 ATGCAGATATTTGTGAAGACATTGACAGGCAAGACCATCACACTGGAGGTTGAGAGCTCT 19035 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || || || ||| ||||| ||||| |||| ||||| Sbjct 19036 GATACTATTGATAATGTGAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 19095 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| ||||| ||| |||| ||| ||| ||||||||||||| Sbjct 19096 CAGAGGCTCATCTTTGCCGGCAAGCAACTGGAGGATGGCCGAACCCTGGCCGATTATAAC 19155 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || || ||||| || || ||| | || |||||||| || |||||| Sbjct 19156 ATTCAGAAGGAATCCACCCTCCATCTTGTCTTGCGTCTCCGTGGTGGC 19203 >seq23608 Length=1529151 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || |||||||| ||||| ||||| || |||| || ||| Sbjct 17385 ATGCAGATATTTGTGAAGACGTTGACGGGCAAGACCATCACTCTGGAGGTTGAGN--AGC 17442 Query 111160 ---GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 ||| | ||| | || ||| |||||| || || ||||| |||| ||| Sbjct 17443 TCTGATACGATTGATAATGTCAAAGCTAAAATTCAAGATAAGGAAGGTATTCCTCCTGAT 17502 Query 111217 CAA-CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111275 || || || || |||| ||| ||||| ||| |||| ||| ||| |||||||||| Sbjct 17503 CANGCAGAGACTCATTTTTGCCGGCAAGCAACTGGAGGATGGCCGAACCCTGGCCGATTA 17562 Query 111276 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 ||| || || || ||||| || || || | || ||||||||||| |||||| Sbjct 17563 TAACATTCAGAAGGAATCCACCCTTCACCTTGTCTTGCGTCTGCGTGGTGGC 17614 >seq6082 Length=1120084 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 || ||||| || ||||| || || ||||| || || ||||| ||| ||||| ||| | Sbjct 976530 AAGATGCAGATCTTTGTGAAGACTTTGACGGGGAAGACCATAACCCTGGAAGTGGAGAGC 976471 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 |||||||| ||| | || || ||||| ||||| || || ||||| ||| Sbjct 976470 AGCGATTCCATTGAGAATGTCAAGGCCAAAATCCAAGACAAGGAGGGTATTCCCCCAGAT 976411 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 ||||| || || || | ||| || || || || || ||| | || | || |||||| Sbjct 976410 CAACAGAGACTGATATTTGCCGGGAAGCAGTTAGAGGATGGGCGATCTCTTGCAGATTAT 976351 Query 111277 AATATACAAAAAGAATCTACACTACA 111302 ||||| |||||||| || ||||| || Sbjct 976350 AATATCCAAAAAGAGTCAACACTTCA 976325 >seq8179 Length=775255 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || |||||||| ||||| ||||| || |||| || | Sbjct 378199 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACCATCACACTGGAGGTTGAGAGCTCT 378258 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| || ||| ||||| ||||| |||| ||||| Sbjct 378259 GATACGATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 378318 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 |||||||| |||| ||| || || || | || ||| | ||| | ||||||||||| Sbjct 378319 CAAAGGCTCATTTTTGCCGGGAAGCAGCTAGAGGATGGCAGAACCCTCGCCGATTATAAC 378378 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || || ||||| || || || | || |||||||||| |||||| Sbjct 378379 ATTCAGAAGGAATCCACCCTGCACCTTGTCCTGCGTCTGCGTGGTGGC 378426 >seq5713 Length=447580 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 || ||||| || || || || || ||||| ||||| ||||| | | | ||| ||| | Sbjct 301941 AAGATGCAGATCTTCGTAAAGACCTTGACGGGCAAGACCATAAGCTTAGAAGTTGAAAGC 301882 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCG-TCGA 111215 || ||| | | | | | || || |||||| |||| |||||| | || || |||| Sbjct 301881 AGTGATACAATCGACAATGTGAAGGCAAAAATCTAGGACAGAGAAGG-GATCTCGCTCGA 301823 Query 111216 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111275 || ||| || || | |||| ||||||||||||||||| ||| |||| ||||| Sbjct 301822 CCAGCAACATCTGATATTTGCGAGCAAACAATTGGAAGATGGCCGCACTCTGGCAGATTA 301763 Query 111276 TAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111312 ||||| |||||||| || || | ||| | |||||| Sbjct 301762 CAATATTCAAAAAGAGTCAACCTTGCATCTTGTGTTG 301726 >seq9751 Length=53254 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || |||||||| ||||| || ||||| |||| || | | Sbjct 8833 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACGATTACACTGGAGGTTGAGAGCTCC 8892 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | | | | |||||| ||| ||| ||||| ||||| |||| ||||| Sbjct 8893 GATACGATCGATAATGTAAAAGCAAAGATTCAGGACAAGGAAGGGATTCCTCCTGATCAG 8952 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | || || || || |||| ||| ||| | || |||||||| Sbjct 8953 CAGAGGCTCATATTCGCTGGTAAGCAGCTGGAGGATGGGCGTACTCTTGCTGATTATAAC 9012 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| ||||| || || |||| ||||||||||| || || Sbjct 9013 ATCCAGAAAGAGTCTACGCTTCACCTAGTCTTGCGTCTGCGTGGCGG 9059 >seq6287 Length=202565 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| || || |||| || ||||||||||| ||||| |||| | Sbjct 72771 ATGCAAATCTTTGTGAAGACCCTGACAGGTAAAACCATTACTCTGGAAGTGGAAAGCTCG 72830 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | | || || ||||| ||||| || || |||| || || Sbjct 72831 GACACCATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAGGGAATTCCACCTGACCAG 72890 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||| | || | ||| || || || |||||||| | ||| |||||||||| ||| Sbjct 72891 CAGAGGTTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACTCTGGCCGATTACAAT 72950 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || || ||||| || || || | ||| | ||||| || |||||| Sbjct 72951 ATTCAGAAGGAATCGACCCTTCACCTGGTGCTTCGTCTCCGTGGTGGC 72998 >seq190644 Length=148340 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 111184 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111243 |||||| || || ||||| |||| ||||| || ||||| |||| ||| || || Sbjct 80420 AAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAGCAGAGGCTCATTTTTGCTGGAAAG 80361 Query 111244 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111303 ||| |||| ||| ||| ||||||||||||| || || || ||||| || || || Sbjct 80360 CAACTGGAGGATGGCCGAACCCTGGCCGATTATAACATTCAGAAGGAATCCACCCTTCAC 80301 Query 111304 TTAGTGTTGCGTCTGCGCGGTGGC 111327 | || ||||||||||| |||||| Sbjct 80300 CTTGTCTTGCGTCTGCGTGGTGGC 80277 >seq6377 Length=1564332 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||||||||| ||||||||||||| || || ||||| ||| | Sbjct 1467660 ATGCAGATCTTTGTCAAAACCCTGACCGGCAAAACAATCACTCTGGAAGTCGAAAGCTCT 1467601 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | | || || |||||| ||||| ||||| |||| |||||| Sbjct 1467600 GACACAATTGACAACGTCAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCCGATCAG 1467541 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| || ||||| | |||||| ||| | |||||||| || Sbjct 1467540 CAGAGGCTGATCTTTGCTGGAAAACAGCTCGAAGATGGACGCACTCTCGCCGATTACAAC 1467481 Query 111280 ATACAAAAAGAATCTACACTACA 111302 || || || ||||| || || || Sbjct 1467480 ATCCAGAAGGAATCGACTCTTCA 1467458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399946776868072