Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq224353 104 2e-17 seq1341871 84.2 2e-11 >seq224353 Length=132916 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 16408 ACTTTCTATCCATTTTTTAGCCCAATTTGCTTTTTGTTTAACACAGTTCATGTTCTCTAT 16467 ||| |||||||| || |||||||| | |||||| | | ||| || |||| || Sbjct 9267 ACTCTCTATCCAGTTGAGAGCCCAATCTTCTTTTTTTGCCAAACAAGGAATTGTCTCAAT 9208 Query 16468 TGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACT 16527 |||||| |||| | ||| ||||| || |||| | ||| || || | |||||||| Sbjct 9207 TGCATTGAATAGGTGATTATTTTCCTTAGGATCTTTGACATATGTTTCCAACAGTAAACT 9148 Query 16528 ATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAA-GCATCTAGCTT 16586 |||||| ||||| |||||||| || || || ||||| || |||||||| ||| | ||| | Sbjct 9147 ATACATCTCTGAGTGAATATTTTCAATGGCAATCTGGAACCCATAAAATGCA-CGAGCCT 9089 Query 16587 CGGATATTTGTACTTC 16602 | | | ||| ||||| Sbjct 9088 CTGGAACTTGAACTTC 9073 >seq1341871 Length=123413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/173 (71%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 16408 ACTTTCTATCCATTTTTTAGCCCAATTTGCTTTTTGTTTAACACAGTTCATGTTCTCTAT 16467 ||| |||||||| || ||||||||||||||| | | | ||| | |||| || Sbjct 12429 ACTCTCTATCCAGTTGAGAGCCCAATTTGCTTTCTTTGCCAGACAAGGAACTGTCTCAAT 12370 Query 16468 TGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACT 16527 |||||| || || | ||| ||||| || |||| | ||| || || | |||||||| Sbjct 12369 TGCATTGAACAAGTGATTCTTTTCCTTAGGATCTTTGACATATGTTTCCAACAGTAAACT 12310 Query 16528 ATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAA-GCAT 16579 ||||| | ||| |||||||| || || | || || || |||||||| |||| Sbjct 12309 GTACATCTTTGAGTGAATATTTTCAATGGAAATTTGGAACCCATAAAATGCAT 12257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452334053430400