Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq8373 86.0 5e-12 >seq8373 Length=31397 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| |||||||||||| | |||||||| || || || |||| || || |||| Sbjct 8347 ATGCAGATCTTTGTTAAAACCCTTACCGGCAAGACCATCACTCTCGAGGTTGA---GAGC 8403 Query 24892 ---GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 |||| | || | ||| |||| || || | || |||||| | || |||| Sbjct 8404 TCTGACACCATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGAC 8463 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||||| ||| | |||| ||| || ||||| ||||| || | || | ||||||| Sbjct 8464 CAGCAGCGTCTGATATTTGCCGGAAAACAGCTGGAGGACGGCCGTACCCTTGCCGATTAC 8523 Query 25009 AGCATACAGAAAGAGGCCACGCTTCAT 25035 | ||| ||||| || ||||||| ||| Sbjct 8524 AACATCCAGAAGGAATCCACGCTGCAT 8550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409329013690880