Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1360146 89.7 1e-12 seq1165397 87.8 3e-12 seq1663963 84.2 4e-11 seq1278416 84.2 4e-11 >seq1360146 Length=165906 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 101966 TCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTC 102025 || || |||||| | ||||| |||||| | |||| || || || | ||||||||| || Sbjct 29131 TCGATCTTCTGGCTGAAGAAAAGGGGTCTAATGCCAGGCCTGACTTTTTCCAATGAGCTC 29190 Query 102026 ATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCT 102069 ||||| ||||||||||| ||||| |||| ||||| ||| |||| Sbjct 29191 ATTTCAAGGGACGAAGGCCTTCACTGCGATTTTGCCTGCTTGCT 29234 >seq1165397 Length=78751 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 101969 ATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATT 102028 || || ||| | ||||| ||||| | |||| |||||||| | ||||||||| ||||| Sbjct 59098 ATCTTTTGGCTGAAGAAAAGGGGGCTGATGCCCGGTCTCACTTTTTCCAATGAGCTCATT 59039 Query 102029 TCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCT 102069 || ||||| ||||| || ||| | |||||||||||| |||| Sbjct 59038 TCAAGGGATGAAGGCCTCCATTGTGACTTTGCATGCTTGCT 58998 >seq1663963 Length=3653 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 101966 TCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTC 102025 || || |||||| | ||||| || ||| | |||| || || || | ||| |||||| || Sbjct 1592 TCGATCTTCTGGCTGAAGAAGAGAGGTCTAATGCCAGGGCTAACTTTCTCGAATGAGCTC 1651 Query 102026 ATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCT 102069 ||||| ||||| ||||| ||||| | |||||||||||| |||| Sbjct 1652 ATTTCAAGGGATGAAGGCCTTCACTGTGACTTTGCATGCTTGCT 1695 >seq1278416 Length=19186 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 101966 TCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTC 102025 || || |||||| | ||||| || ||| | |||| || || || | ||| |||||| || Sbjct 17140 TCGATCTTCTGGCTGAAGAAGAGAGGTCTAATGCCAGGGCTAACTTTCTCGAATGAGCTC 17199 Query 102026 ATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCT 102069 ||||| ||||| ||||| ||||| | |||||||||||| |||| Sbjct 17200 ATTTCAAGGGATGAAGGCCTTCACTGTGACTTTGCATGCTTGCT 17243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 967262997723120