Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq224353 84.2 2e-11 seq54299 84.2 2e-11 >seq224353 Length=132916 Score = 84.2 bits (92), Expect = 2e-11 Identities = 202/303 (67%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 |||||| || |||||||| |||| ||| | || ||||| || || || || Sbjct 9261 TATCCAGTTGAGAGCCCAATCTTCTTTTTTTGCCAAACAAGGAATTGTCTCAATTGCATT 9202 Query 11866 AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACAT 11925 |||| || | ||||| || |||| | |||||||| || | | |||||||||||| Sbjct 9201 GAATAGGTGATTATTTTCCTTAGGATCTTTGACATATGTTTCCAACAGTAAACTATACAT 9142 Query 11926 TTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACA 11985 ||||| ||||||||||| || || || || || ||||| || || ||||||| | Sbjct 9141 CTCTGAGTGAATATTTTCAATGGCAATCTGGAACCCATAAAATGCACGAGCCTCTGGAAC 9082 Query 11986 CTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 || || || ||| ||| | |||| | ||| ||||| |||||| | | Sbjct 9081 TTGAACTTCTTTCATGAAA-CGCCTAGCTAGGATTTCAAGAACAATCCCATCAAATGTAG 9023 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAAT 12104 |||| ||||| || ||| | || |||| || || || |||| ||| ||||||| Sbjct 9022 CAAAGAATGCAAGGTCATGAGTGATGAAGTGCTTCTCATCACTAGTCAATGCCTCCCAAT 8963 Query 12105 CAT 12107 || Sbjct 8962 GAT 8960 >seq54299 Length=354826 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| |||||||||||||| | ||| || ||||| || || ||||| ||||| ||||| Sbjct 292868 ACAAGCAAAATCACAATGAAGACCCTCATCTCTTGAAATCAGCTCATTTGAAAAAGTTAA 292927 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAA--TGAACCAGAAAAG 11746 || ||||| || || ||||| || | ||||||||| ||| ||| || | | ||||| Sbjct 292928 ACCTGGCATTAAGCCCCGTTTCTTCAACCAAAATATGGCACAAAAGCTGCATTAAAAAAG 292987 Query 11747 AAT 11749 ||| Sbjct 292988 AAT 292990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458214536956160