Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq54299 109 5e-19 >seq54299 Length=354826 Score = 109 bits (120), Expect = 5e-19 Identities = 88/105 (84%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||||||||||||||| ||||||||||| ||| || || |||||||| ||||| Sbjct 292868 ACAAGCAAAATCACAATGAAGACCCTCATCTCTTGAAATCAGCTCATTTGAAAAAGTTAA 292927 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 |||||||| || || ||||| || ||||||||||| ||| |||| Sbjct 292928 ACCTGGCATTAAGCCCCGTTTCTTCAACCAAAATATGGCA-CAAA 292971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 469171201577600