Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq54299 109 5e-19 seq224353 84.2 2e-11 >seq54299 Length=354826 Score = 109 bits (120), Expect = 5e-19 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| ||||||||||||||||| ||||||||||| ||| || || |||||||| ||||| Sbjct 292868 ACAAGCAAAATCACAATGAAGACCCTCATCTCTTGAAATCAGCTCATTTGAAAAAGTTAA 292927 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||||| || || ||||| || ||||||||||| ||| Sbjct 292928 ACCTGGCATTAAGCCCCGTTTCTTCAACCAAAATATGGCA 292967 >seq224353 Length=132916 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/164 (72%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 |||||| || |||||| || ||||||| | | || ||||| || |||||||| Sbjct 9261 TATCCAGTTGAGAGCCCAATCTTCTTTTTTTGCCAAACAAGGAATTGTCTCAATTGCATT 9202 Query 13899 GAATAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956 ||||| || | || || |||| | |||| | ||||| || | ||||| |||||| Sbjct 9201 GAATAGGTGATTATTTTCCTTAGGATCTTTGACA--TATGTTTCCAACAGTAAACTATAC 9144 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000 || || ||||| || ||||| || || ||||| || |||||||| Sbjct 9143 ATCTCTGAGTGAATATTTTCAATGGCAATCTGGAACCCATAAAA 9100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468057070584960