Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq924054 87.8 1e-12 seq1588668 84.2 1e-11 seq230752 84.2 1e-11 >seq924054 Length=140678 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/214 (70%), Gaps = 14/214 (7%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----TCATCCA 33221 ||||| || || || || || ||||||||||| | ||| | ||| | || |||| Sbjct 14756 ATGCAGCGTGGATTCCTTCTGGATATTGTAATCGG-CAA---GGGTTCGGCCATCTTCCA 14701 Query 33222 ATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GC 33278 ||||||||| |||||| | ||| || ||||||| ||| |||||||| || || | Sbjct 14700 GCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGAATGCCTTCCTTATCCTGGA 14641 Query 33279 TAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTT 33338 | | |||| |||| | | ||| ||||| | | || || ||||| || || | Sbjct 14640 TTTTTGCCT---TTACATTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATGGTCT 14584 Query 33339 TTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 | || ||||||||||| ||||| |||||||| || Sbjct 14583 TGCCGGTAAGAGTTTTGACGAAGATTTGCATCTT 14550 >seq1588668 Length=25065 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||||| || | ||||||||||| ||||| || ||||| ||||||||||||| | Sbjct 17269 CCTCCTCTTAGACGAAGCACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAGCC 17328 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | || |||| ||||| ||| || || | | |||||||| | ||| Sbjct 17329 AAGGTCCTGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGA 17388 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || ||||| || || | | | ||| || || | | ||| ||||| | | | Sbjct 17389 ATTCCTTCCTTGTCCTGGATCTTGGCC---TTGACGTTGTCAATGGTGTCCGAGCTCTCA 17445 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || |||| || || || ||||| || || |||||||| || ||||||||| Sbjct 17446 ACTTCCAATGTAATTGTCTTTCCAGTTAGTGTTTTTACAAAGATTTGCATG 17496 >seq230752 Length=20368 Score = 84.2 bits (92), Expect = 1e-11 Identities = 162/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || |||||||| | || | ||| | |||| ||||| || || || ||||| Sbjct 12134 AATCTGCATGCCGCCTCTCAGACGAAGCACAAGGTGCAGGGTCGATTCCTTCTGAATATT 12193 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 |||||||| |||| | | || || | |||||| || ||| || | | ||||| Sbjct 12194 GTAATCAGCCAAAGTCCGGCCATCTTCAAGTTGCTTGCCGGCAAAGATAAGCCTCTGCTG 12253 Query 33253 GTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTT 33312 ||| | |||||||||||| || || ||| ||| || | | ||| ||||| Sbjct 12254 GTCAGGGGGTATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTATCAATGGTGTCTGA 12313 Query 33313 GGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 | | ||| || | ||| || || || || ||||| ||||| || ||||| |||||| Sbjct 12314 GCTCTCAACCTCTAAAGTGATTGTCTTGCCAGTAAGGGTTTTGACAAAAATCTGCATG 12371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 311938017792672