Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq598909 95.1 8e-15 seq1577800 91.5 1e-13 seq1380590 91.5 1e-13 seq874626 91.5 1e-13 seq571526 91.5 1e-13 seq1205411 87.8 1e-12 seq999842 87.8 1e-12 seq564288 84.2 2e-11 >seq598909 Length=480040 Score = 95.1 bits (104), Expect = 8e-15 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||||||||| ||||||||||||| |||||||| | || | ||||| | Sbjct 404495 CATCCTCGAGTTGTTTTCCAGCAAATATCAACCTCTGCTGGTCGGGTGGAATCCCTTCCT 404554 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| |||||| || || || ||| ||| |||| ||| || || ||| | Sbjct 404555 TGTCTTGAATTTTAGCCTTAACGTTATCAATAGTGTCTGAGCTCTCAACTTCAGGCGTGA 404614 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||| ||||| | ||| || ||||| |||||||| Sbjct 404615 TTGTTTTTCCGGTCAGAGTTTTGACAAAGATTTGCAT 404651 >seq1577800 Length=4899 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| || || |||||||| | ||| |||| |||| || || || ||||| Sbjct 2114 CTCTTTCTGGATGTTATAATCAGCCAGGGTACGACCATCTTCCAGCTGCTTACCAGCAAA 2173 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||||||| ||||||||| |||| | ||| || || || ||| || || || | Sbjct 2174 TATCAACCTTTGCTGGTCTGGAGGGATACCCTCCTTGTCCTGAATCTTAGCCTTCACATT 2233 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | ||| ||||||| |||||| || | |||||| ||||| || | | ||| ||||| Sbjct 2234 ATCAATCGTATCTGAGCTCTCCACCTCCAACGTAATGGTTTTCCCAATAAGAGTTTTCAC 2293 Query 44110 AAATATTTGCATG 44122 ||| || |||||| Sbjct 2294 AAAAATCTGCATG 2306 >seq1380590 Length=84949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| || || |||||||| | ||| |||| |||| || || || ||||| Sbjct 17336 CTCTTTCTGGATGTTATAATCAACCAGGGTACGACCATCTTCCAGCTGCTTACCAGCAAA 17395 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||||||| ||||||||| |||| | ||| || || || ||| || || || | Sbjct 17396 TATCAACCTTTGCTGGTCTGGAGGGATACCCTCCTTGTCCTGAATCTTAGCCTTCACATT 17455 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | ||| ||||||| |||||| || | |||||| ||||| || | | ||| ||||| Sbjct 17456 ATCAATCGTATCTGAGCTCTCCACCTCCAACGTAATGGTTTTCCCAATAAGAGTTTTCAC 17515 Query 44110 AAATATTTGCATG 44122 ||| || |||||| Sbjct 17516 AAAAATCTGCATG 17528 >seq874626 Length=5803 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| || || |||||||| | ||| |||| |||| || || || ||||| Sbjct 3691 CTCTTTCTGGATGTTATAATCAGCCAGGGTACGACCATCTTCCAGCTGCTTACCAGCAAA 3632 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||||||| ||||||||| |||| | ||| || || || ||| || || || | Sbjct 3631 TATCAACCTTTGCTGGTCTGGAGGGATACCCTCCTTGTCCTGAATCTTAGCCTTCACATT 3572 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | ||| ||||||| |||||| || | |||||| ||||| || | | ||| ||||| Sbjct 3571 ATCAATCGTATCTGAGCTCTCCACCTCCAACGTAATGGTTTTCCCAATAAGAGTTTTCAC 3512 Query 44110 AAATATTTGCATG 44122 ||| || |||||| Sbjct 3511 AAAAATCTGCATG 3499 >seq571526 Length=18416 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| || || |||||||| | ||| |||| |||| || || || ||||| Sbjct 5003 CTCTTTCTGGATGTTATAATCAGCCAGGGTACGACCATCTTCCAGCTGCTTACCAGCAAA 4944 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||||||| ||||||||| |||| | ||| || || || ||| || || || | Sbjct 4943 TATCAACCTTTGCTGGTCTGGAGGGATACCCTCCTTGTCCTGAATCTTAGCCTTCACATT 4884 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | ||| ||||||| |||||| || | |||||| ||||| || | | ||| ||||| Sbjct 4883 ATCAATCGTATCTGAGCTCTCCACCTCCAACGTAATGGTTTTCCCAATAAGAGTTTTCAC 4824 Query 44110 AAATATTTGCATG 44122 ||| || |||||| Sbjct 4823 AAAAATCTGCATG 4811 >seq1205411 Length=103332 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||| || || || |||||| || || |||||||| | ||| |||| || Sbjct 99071 CACCAGGTGCAGAGTTGACTCTTTCTGGATGTTATAATCAGCCAGGGTACGTCCATCTTC 99012 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||| || || || ||||||||||||| ||| ||||| |||| | ||| || || || Sbjct 99011 CAACTGCTTACCAGCAAATATCAACCTTTGTTGGTCTGGAGGGATACCCTCCTTGTCCTG 98952 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || || || || || ||| ||||||| |||||| || | ||||| ||||| Sbjct 98951 GATCTTAGCCTTCACATTATCAATCGTATCTGAGCTCTCCACCTCCAAAGTAATGGTTTT 98892 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || | || |||||||| ||||||||| Sbjct 98891 CCCAGTAAGGGTTTTCACAAAAATTTGCATG 98861 >seq999842 Length=17275 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||| || || || |||||| || || |||||||| | ||| |||| || Sbjct 3851 CACCAGGTGCAGAGTTGACTCTTTCTGGATGTTATAATCAGCCAGGGTACGTCCATCTTC 3910 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||| || || || ||||||||||||| ||| ||||| |||| | ||| || || || Sbjct 3911 CAACTGCTTACCAGCAAATATCAACCTTTGTTGGTCTGGAGGGATACCCTCCTTGTCCTG 3970 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || || || || || ||| ||||||| |||||| || | ||||| ||||| Sbjct 3971 GATCTTAGCCTTCACATTATCAATCGTATCTGAGCTCTCCACCTCCAAAGTAATGGTTTT 4030 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || | || |||||||| ||||||||| Sbjct 4031 CCCAGTAAGGGTTTTCACAAAAATTTGCATG 4061 >seq564288 Length=124733 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 43961 CGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCT 44020 ||| |||| |||| |||||| || |||||||| | || ||||| || |||| | |||| Sbjct 27773 CGCCCATCCTCCAGTTGTTTACCAGCAAATATGAGCCTCTGCTGATCAGGAGGAATACCT 27714 Query 44021 TCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACC 44080 || || || ||||||| ||| || || ||| |||| | ||| || || | Sbjct 27713 TCCTTGTCCTAAATTTTCACTTTTACGTTATCAATCATATCGGAGCTCTCAACCTCCAGT 27654 Query 44081 GTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || || || || |||||||||||||| ||||| Sbjct 27653 GTGATCGTCTTGCCTGTCAACGTCTTCACAAATATATGCAT 27613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347165614212672