Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09]
1,760,464 sequences; 22,103,635,615 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq598909 95.1 8e-15
seq1577800 91.5 1e-13
seq1380590 91.5 1e-13
seq874626 91.5 1e-13
seq571526 91.5 1e-13
seq1205411 87.8 1e-12
seq999842 87.8 1e-12
seq564288 84.2 2e-11
>seq598909
Length=480040
Score = 95.1 bits (104), Expect = 8e-15
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| || | ||||||||| ||||||||||||| |||||||| | || | ||||| |
Sbjct 404495 CATCCTCGAGTTGTTTTCCAGCAAATATCAACCTCTGCTGGTCGGGTGGAATCCCTTCCT 404554
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
| ||| |||||| || || || ||| ||| |||| ||| || || ||| |
Sbjct 404555 TGTCTTGAATTTTAGCCTTAACGTTATCAATAGTGTCTGAGCTCTCAACTTCAGGCGTGA 404614
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||||| ||||| | ||| || ||||| ||||||||
Sbjct 404615 TTGTTTTTCCGGTCAGAGTTTTGACAAAGATTTGCAT 404651
>seq1577800
Length=4899
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989
|||||| || || |||||||| | ||| |||| |||| || || || |||||
Sbjct 2114 CTCTTTCTGGATGTTATAATCAGCCAGGGTACGACCATCTTCCAGCTGCTTACCAGCAAA 2173
Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049
|||||||| ||||||||| |||| | ||| || || || ||| || || || |
Sbjct 2174 TATCAACCTTTGCTGGTCTGGAGGGATACCCTCCTTGTCCTGAATCTTAGCCTTCACATT 2233
Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109
| ||| ||||||| |||||| || | |||||| ||||| || | | ||| |||||
Sbjct 2234 ATCAATCGTATCTGAGCTCTCCACCTCCAACGTAATGGTTTTCCCAATAAGAGTTTTCAC 2293
Query 44110 AAATATTTGCATG 44122
||| || ||||||
Sbjct 2294 AAAAATCTGCATG 2306
>seq1380590
Length=84949
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989
|||||| || || |||||||| | ||| |||| |||| || || || |||||
Sbjct 17336 CTCTTTCTGGATGTTATAATCAACCAGGGTACGACCATCTTCCAGCTGCTTACCAGCAAA 17395
Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049
|||||||| ||||||||| |||| | ||| || || || ||| || || || |
Sbjct 17396 TATCAACCTTTGCTGGTCTGGAGGGATACCCTCCTTGTCCTGAATCTTAGCCTTCACATT 17455
Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109
| ||| ||||||| |||||| || | |||||| ||||| || | | ||| |||||
Sbjct 17456 ATCAATCGTATCTGAGCTCTCCACCTCCAACGTAATGGTTTTCCCAATAAGAGTTTTCAC 17515
Query 44110 AAATATTTGCATG 44122
||| || ||||||
Sbjct 17516 AAAAATCTGCATG 17528
>seq874626
Length=5803
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989
|||||| || || |||||||| | ||| |||| |||| || || || |||||
Sbjct 3691 CTCTTTCTGGATGTTATAATCAGCCAGGGTACGACCATCTTCCAGCTGCTTACCAGCAAA 3632
Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049
|||||||| ||||||||| |||| | ||| || || || ||| || || || |
Sbjct 3631 TATCAACCTTTGCTGGTCTGGAGGGATACCCTCCTTGTCCTGAATCTTAGCCTTCACATT 3572
Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109
| ||| ||||||| |||||| || | |||||| ||||| || | | ||| |||||
Sbjct 3571 ATCAATCGTATCTGAGCTCTCCACCTCCAACGTAATGGTTTTCCCAATAAGAGTTTTCAC 3512
Query 44110 AAATATTTGCATG 44122
||| || ||||||
Sbjct 3511 AAAAATCTGCATG 3499
>seq571526
Length=18416
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989
|||||| || || |||||||| | ||| |||| |||| || || || |||||
Sbjct 5003 CTCTTTCTGGATGTTATAATCAGCCAGGGTACGACCATCTTCCAGCTGCTTACCAGCAAA 4944
Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049
|||||||| ||||||||| |||| | ||| || || || ||| || || || |
Sbjct 4943 TATCAACCTTTGCTGGTCTGGAGGGATACCCTCCTTGTCCTGAATCTTAGCCTTCACATT 4884
Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109
| ||| ||||||| |||||| || | |||||| ||||| || | | ||| |||||
Sbjct 4883 ATCAATCGTATCTGAGCTCTCCACCTCCAACGTAATGGTTTTCCCAATAAGAGTTTTCAC 4824
Query 44110 AAATATTTGCATG 44122
||| || ||||||
Sbjct 4823 AAAAATCTGCATG 4811
>seq1205411
Length=103332
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971
||||| || || || |||||| || || |||||||| | ||| |||| ||
Sbjct 99071 CACCAGGTGCAGAGTTGACTCTTTCTGGATGTTATAATCAGCCAGGGTACGTCCATCTTC 99012
Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031
||| || || || ||||||||||||| ||| ||||| |||| | ||| || || ||
Sbjct 99011 CAACTGCTTACCAGCAAATATCAACCTTTGTTGGTCTGGAGGGATACCCTCCTTGTCCTG 98952
Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091
|| || || || || ||| ||||||| |||||| || | ||||| |||||
Sbjct 98951 GATCTTAGCCTTCACATTATCAATCGTATCTGAGCTCTCCACCTCCAAAGTAATGGTTTT 98892
Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|| || | || |||||||| |||||||||
Sbjct 98891 CCCAGTAAGGGTTTTCACAAAAATTTGCATG 98861
>seq999842
Length=17275
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971
||||| || || || |||||| || || |||||||| | ||| |||| ||
Sbjct 3851 CACCAGGTGCAGAGTTGACTCTTTCTGGATGTTATAATCAGCCAGGGTACGTCCATCTTC 3910
Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031
||| || || || ||||||||||||| ||| ||||| |||| | ||| || || ||
Sbjct 3911 CAACTGCTTACCAGCAAATATCAACCTTTGTTGGTCTGGAGGGATACCCTCCTTGTCCTG 3970
Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091
|| || || || || ||| ||||||| |||||| || | ||||| |||||
Sbjct 3971 GATCTTAGCCTTCACATTATCAATCGTATCTGAGCTCTCCACCTCCAAAGTAATGGTTTT 4030
Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|| || | || |||||||| |||||||||
Sbjct 4031 CCCAGTAAGGGTTTTCACAAAAATTTGCATG 4061
>seq564288
Length=124733
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 43961 CGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCT 44020
||| |||| |||| |||||| || |||||||| | || ||||| || |||| | ||||
Sbjct 27773 CGCCCATCCTCCAGTTGTTTACCAGCAAATATGAGCCTCTGCTGATCAGGAGGAATACCT 27714
Query 44021 TCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACC 44080
|| || || ||||||| ||| || || ||| |||| | ||| || || |
Sbjct 27713 TCCTTGTCCTAAATTTTCACTTTTACGTTATCAATCATATCGGAGCTCTCAACCTCCAGT 27654
Query 44081 GTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || || || || || || |||||||||||||| |||||
Sbjct 27653 GTGATCGTCTTGCCTGTCAACGTCTTCACAAATATATGCAT 27613
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347165614212672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |