Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq224353 100 2e-16 seq236632 91.5 1e-13 seq1488072 82.4 6e-11 seq324985 82.4 6e-11 seq54299 82.4 6e-11 >seq224353 Length=132916 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 13324 ACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTAT 13383 |||||||||||| || ||||| | | |||||| | | || || | || || Sbjct 9267 ACTCTCTATCCAGTTGAGAGCCCAATCTTCTTTTTTTGCCAAACAAGGAATTGTCTCAAT 9208 Query 13384 TGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCT 13443 ||| || |||| | ||| ||||||||| ||| | ||| || || | || ||| || Sbjct 9207 TGCATTGAATAGGTGATTATTTTCCTTAGGATCTTTGACATATGTTTCCAACAGTAAACT 9148 Query 13444 ATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTC 13503 |||||| ||||| ||||||||||| || || || ||||| |||||||| | |||||| Sbjct 9147 ATACATCTCTGAGTGAATATTTTCAATGGCAATCTGGAACCCATAAAATGCACGAGCCTC 9088 Query 13504 TGATACCTGAACTTC 13518 || || |||||||| Sbjct 9087 TGGAACTTGAACTTC 9073 >seq236632 Length=228148 Score = 91.5 bits (100), Expect = 1e-13 Identities = 179/261 (69%), Gaps = 9/261 (3%) Strand=Plus/Plus Query 13325 CTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT--A 13382 ||||||||||| || ||||| | || ||||| || | | ||| | | || | Sbjct 117256 CTCTCTATCCAGTTGAGAGCCCAATCTGATTTTTTTTCTAGAC---TCAAACTGCCTCAA 117312 Query 13383 TTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC 13442 |||| || || || | ||| ||||||||| ||| | ||| || || | || ||| | Sbjct 117313 TTGCTTTGAACAAGTGATTATTTTCCTTAGGATCTTTGACATATGTTTCCAACAGTAAAC 117372 Query 13443 TATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCT 13502 | ||||| ||||| ||||||||||| || || || ||||| |||||||| | ||||| Sbjct 117373 TGTACATCTCTGAGTGAATATTTTCAATGGCAATCTGGAACCCATAAAATGCACGAGCCT 117432 Query 13503 CTGATACCTGAACTTC--GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560 ||| || |||| ||| | ||| | | || | ||||| | ||| ||||| || Sbjct 117433 TTGAAACTTGAAATTCTTTCATGAAACGCCT--AGCAAGGTTTTTGAGAACAATCCCATC 117490 Query 13561 ACTAGCAGCaaaaaaaGCAAG 13581 | |||||||| || ||||| Sbjct 117491 AGAGGCAGCAAAGAATGCAAG 117511 >seq1488072 Length=30855 Score = 82.4 bits (90), Expect = 6e-11 Identities = 180/266 (68%), Gaps = 9/266 (3%) Strand=Plus/Minus Query 13324 ACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTAT 13383 |||||||||||| || ||||| | |||||| | | ||| | |||| || Sbjct 29379 ACTCTCTATCCAATTGAGAGCCCAATCTGCTTTCTTT----GCCAGACAACTGTTTCAAT 29324 Query 13384 TGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCT 13443 ||| || || | | | ||||||||||| ||| | ||| || || | || ||| | Sbjct 29323 TGCATTGAACAGGTGA-TTTTTTCCTTAGGATCTTTGACATATGTTTCCAACAGTAAATT 29265 Query 13444 ATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTC 13503 ||||| ||||| |||||| |||| || || || ||||| |||| ||| | |||||| Sbjct 29264 TTACATCTCTGAGTGAATACTTTCAATGGCAATCTGGAACCCATGAAATGCACGAGCCTC 29205 Query 13504 TGATACCTGAACTTC--GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 | || |||||||| | |||| | | |||| ||||||| ||| ||||| ||| Sbjct 29204 TCGAACTTGAACTTCTTTCATGAAAAAC--CCAGCTAGGTTTTCGAGAACAATCCCATCA 29147 Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTG 13587 ||| |||| || ||||| | ||| Sbjct 29146 GAGGCAACAAAGAATGCAAGGACGTG 29121 >seq324985 Length=9845 Score = 82.4 bits (90), Expect = 6e-11 Identities = 180/266 (68%), Gaps = 9/266 (3%) Strand=Plus/Plus Query 13324 ACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTAT 13383 |||||||||||| || ||||| | |||||| | | ||| | |||| || Sbjct 1303 ACTCTCTATCCAATTGAGAGCCCAATCTGCTTTCTTT----GCCAGACAACTGTTTCAAT 1358 Query 13384 TGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCT 13443 ||| || || | | | ||||||||||| ||| | ||| || || | || ||| | Sbjct 1359 TGCATTGAACAGGTGA-TTTTTTCCTTAGGATCTTTGACATATGTTTCCAACAGTAAATT 1417 Query 13444 ATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTC 13503 ||||| ||||| |||||| |||| || || || ||||| |||| ||| | |||||| Sbjct 1418 TTACATCTCTGAGTGAATACTTTCAATGGCAATCTGGAACCCATGAAATGCACGAGCCTC 1477 Query 13504 TGATACCTGAACTTC--GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 | || |||||||| | |||| | | |||| ||||||| ||| ||||| ||| Sbjct 1478 TCGAACTTGAACTTCTTTCATGAAAAAC--CCAGCTAGGTTTTCGAGAACAATCCCATCA 1535 Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTG 13587 ||| |||| || ||||| | ||| Sbjct 1536 GAGGCAACAAAGAATGCAAGGACGTG 1561 >seq54299 Length=354826 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/106 (79%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| ||||||||||| || | || |||||||| || ||||| |||||||| |||| Sbjct 292868 ACAAGCAAAATCACAATGAAGACCCTCATCTCTTGAAATCAGCTCATTTGAAAAAGTTAA 292927 Query 13210 ACCCGGCA-TAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254 ||| |||| ||||||| ||||| || | ||||||||| ||| |||| Sbjct 292928 ACCTGGCATTAAGCCC-CGTTTCTTCAACCAAAATATGGCA-CAAA 292971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421735390314528