Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq335002 205 2e-47 seq613168 149 2e-30 seq745658 122 2e-22 seq626143 100 7e-16 seq1440344 95.1 3e-14 seq54299 95.1 3e-14 seq1412493 93.3 1e-13 >seq335002 Length=192544 Score = 205 bits (226), Expect = 2e-47 Identities = 632/968 (65%), Gaps = 30/968 (3%) Strand=Plus/Plus Query 363358 ATCAATTATGAGAAGGATCTCGAGTATGA-TATTTTCGGATATAAGACGATGGAGAAATC 363416 |||| ||||| | |||| | |||||||| || ||| || | |||||| |||||| ||| Sbjct 27469 ATCATCTATGATAGGGATTTTGAGTATGACTACTTT-GGTTTTAAGACATTGGAGAGATC 27527 Query 363417 CTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGT 363476 || || | |||||| | | || | || | || || |||||| ||||| | || Sbjct 27528 ATATCTTTTAAAAGACAATGGAGTTGTTATCGAGAGGCCTCAACATATGATAATGAGAGT 27587 Query 363477 TGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAG 363536 | || | || |||||| || ||||| | || || |||| || || | | Sbjct 27588 TTCTGTAGGGATCCATAAGAATGACATTGATTCAGCTATCAAAACTTACCAGTTAATGTC 27647 Query 363537 TGCTCGTGTATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACA 363596 ||| || || || || | || ||| | | ||||| ||| || | | ||||| Sbjct 27648 ACAACGTTGGTTTACCCATGCTTCTCCTACACTTTTCAATGTTGGGACACCAAGGCCACA 27707 Query 363597 GATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACAC 363656 | || | ||||| ||| | ||||| || ||| ||| ||||| || | ||| || Sbjct 27708 GTTGAGTAGCTGCTTCCTTGTTTGTATGAAAGATGATAGCATTGAGGGGATATATGATAC 27767 Query 363657 ACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAA 363716 || ||| | |||||| | || ||| || || ||| ||||||| || | || || Sbjct 27768 TCTAAAGGAATGTGCTGTAATAAGCAAATCAGCTGGAGGACTTGGTGTTTCAGTACATAA 27827 Query 363717 TGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTC 363775 |||||||| | ||||| || || || || || ||| |||||||| | || | Sbjct 27828 CATTCGTGCAACCAGTAGTTATATCCGAGGAACTAATGG-TACATCGAATGGTATTGTGC 27886 Query 363776 CCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCA 363835 | ||| | | || || | ||||||| | || || || || |||||||| || | | Sbjct 27887 CAATGTTGAGGGTATTCAATGATACTGCTCGTTATGTTGATCAAGGTGGAGGCAAAAGGA 27946 Query 363836 AAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGC 363895 | || || ||||| ||||| || ||||| ||||| ||| ||||||||||| | ||| Sbjct 27947 AGGGTGCATTTGCCATGTACCTAGAGCCATGGCATGCAGATGTTTTTGAGTTTTTGGAGT 28006 Query 363896 TCCGGAA-AAACACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTT 363952 | | || || || ||||| |||| |||| | ||||||||||| || | |||||||| Sbjct 28007 TGAGAAAGAACCATGGGAAGGAAGA-GAAT--AGAGCACGTGATCTATTTTTTGCACTTT 28063 Query 363953 GGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATT------GGTCACTCT 364006 |||| |||| |||||||| | || ||| |||||| || || | | Sbjct 28064 GGGTGCTAGACCTCTTTATGAAAAGGGTCCAGG------AGAATTCTACACGGACATTAT 28117 Query 364007 TTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTAT 364066 |||| || | ||| ||| || ||| | ||| |||||||| || | || | || | Sbjct 28118 TTTGTCCCAATGAAGCTCCCGGGCTTGCTGATTGCTGGGGTGAAGAATTTGAAGAACTGT 28177 Query 364067 ACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGT 364126 || || ||||| ||||| ||||| ||| | | ||||||||||| |||| Sbjct 28178 ACATGAAATATGAGCAAGAGGGTAAGGCAAAAAAGGTTGTACAGGCACAGAAGCTTTGGT 28237 Query 364127 TTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGT 364186 || | || |||| | ||||| || ||||||| || || ||| | | ||| ||| | Sbjct 28238 TTTCTATTCTGGAAGCTCAGATAGAAACAGGAAATCCATACATGCTCTTCAAGGATATCT 28297 Query 364187 GCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC----AACCTATGT 364242 | ||| | || ||| ||||| | || || || || || | | ||||| || Sbjct 28298 GTAACAGAAAAAGCAATCAGCAAAATCTGGGAAC----CATCAAATCTTCTAACCTCTGC 28353 Query 364243 ACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATC 364302 || ||||||||||||| || ||| || || | || |||||| | || || || Sbjct 28354 ACAAAGATTATTGAATATACAAGTCCAATAGAAACAACAGTCTGTAACTTGGCATCTATT 28413 Query 364303 GCGCTTCC 364310 ||||| || Sbjct 28414 GCGCTGCC 28421 >seq613168 Length=425085 Score = 149 bits (164), Expect = 2e-30 Identities = 359/538 (67%), Gaps = 8/538 (1%) Strand=Plus/Plus Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCA 363748 |||| || ||||| || |||||||| ||||||||| || || |||||||| || || | Sbjct 409008 CAGGAGGCATTGGAGTTTCGATCCATAATGTTCGTTCA---AATAGTTACATACGTGGAA 409064 Query 363749 CAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGT 363808 || || || ||||| | || || ||| | ||||||||| | ||||||| | | Sbjct 409065 CAAATGGCACATCAAATGGTATTGTGCCAATGTTGCGTGTGTTTAATGATACTGCTCGCT 409124 Query 363809 ACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATC 363868 | || || || || ||||| || |||| || || || ||||| || | ||||| | Sbjct 409125 ATGTAGATCAAGGAGGAGGCAAAAGCAAGGGTGCCTTCGCTATATACTTGGAGCCATGGC 409184 Query 363869 ATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACAC--GGGAAAAGAGGAATTGCG 363926 ||||||||| |||||| ||| | | | | ||||| || || || || ||| | Sbjct 409185 ATGCCGATA-TTTTGACTTTTTGGTTTTGAGAAAAAAAACCATGGCAAGGAAGAAAACAG 409243 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGC 363986 ||| | ||| ||||||||| || || || || | ||||||||||| || ||| Sbjct 409244 GGCAAGAGATTTGTTCTATGGTCTATGTATTCTAGATCTCTTTATGAAGCGAGTCTAGGA 409303 Query 363987 AGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA-TGTATGGG 364045 | | ||||||| | || || || | || | ||| | | | || ||| |||| Sbjct 409304 CAATGCTACTTGGTCATTGTTCTGTCCTAATGAGTCTCCTAGATTAGCAGACTGT-TGGG 409362 Query 364046 GTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAA 364105 | || || | || | | ||| || ||||| | |||| ||||| | ||| Sbjct 409363 GGGAAGAGTTTGATAAATTGTACCTCAAATATGAGCAGCAGGGCAAGGCCAGGAAGGTTG 409422 Query 364106 TTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCT 364165 | | || ||||| || |||||||| || | || || ||||| || || | | || | Sbjct 409423 TACAAGCTCAGAAACTCTGGTTTGCAATTTTAGAATCTCAGATAGAAACTAGCAATCCTT 409482 Query 364166 ATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 ||||||||||||| || || |||||| | ||| ||| ||| || | | || ||||| Sbjct 409483 ATATGTTGTACAAGGACTCATGCAACAGGAAGATCAATCAGTAGAATTTGGGAACAAT 409540 >seq745658 Length=337835 Score = 122 bits (134), Expect = 2e-22 Identities = 365/560 (65%), Gaps = 5/560 (1%) Strand=Plus/Minus Query 363665 ATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG 363724 |||||| | ||||| ||| |||| || ||||| || | |||||| ||||||| | Sbjct 230782 ATTGTGATGTTATTAGCAAATCACCAGGAGGCATTGGAGTTTTGATCCATAATGTTCATT 230723 Query 363725 CACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || || |||||||| || || ||| || || || || | || || ||| | | Sbjct 230722 CA---AATAGTTACATACGTGGAACAAATGGCACATCAAACGGTATTGTGCCAATGTTGC 230666 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 ||||||| | ||||||| | || || || || || ||||| || | || || || | Sbjct 230665 ATGTGTTTAATGATACTGCTTGCTATGTAGATCAAGGAGGAGGCAAAAGAAAGGGTGCCT 230606 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 | |||| || |||| || ||||| |||||||| || ||| | || | |||| Sbjct 230605 TCACTATATACTTCGATCCATGGCATGCTGATATTTT-GACTTTTTGGATTTGATAAAAA 230547 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || || || ||| | ||| | ||| ||||||||| || ||| || | || | Sbjct 230546 ACCATGGCAAGGAAGAAAACAGGGCAAGAGATTTGTTCTATGGTCTATGGATTCCAGATC 230487 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTC 364024 ||||||||||| || | | | | ||||||| | || | || | || | || Sbjct 230486 TCTTTATGAAGCGAGTCCAAGACAATGCTACTTGGTCATTGTTCTATCCTAATGAGTCTC 230427 Query 364025 CAGGTCTTTCCGA-TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 | || | | | ||| |||| || || | || | | ||| || ||||| | Sbjct 230426 CTGGATTAGCAAACTGTTGGGGGGGAAGAGTTTGATAAATTTTACCTCAAATATGAGCAG 230367 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 |||| ||||| | ||| | | || || || | | |||||| || | || || Sbjct 230366 CAGGGCAAGGCCAGGAAGGTTGTACAAGCTCAAAAAGTCTAGTTTGCAATTTTAGAATCT 230307 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 ||||| || || || | || |||||||||||||| || ||||||||| | ||| ||| Sbjct 230306 CAGATAGAAACTGGCAATCCTTATATGTTGTACAAGGACTCGTGCAACAGGAAGAGCAAT 230247 Query 364204 CAGCAGCACCTTGGTACAAT 364223 |||||| | | || ||||| Sbjct 230246 CAGCAGAATTTGGGAACAAT 230227 >seq626143 Length=38967 Score = 100 bits (110), Expect = 7e-16 Identities = 104/133 (78%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 46906 TGATCCAAATGATTTCGTAAAGGTTCCCATCATTACATCAATATTTGAAGTGTT-AATAT 46964 |||||||||||||||||||||||| |||||||| | ||||||| | ||||| || ||| | Sbjct 27542 TGATCCAAATGATTTCGTAAAGGTGCCCATCATAATATCAATACTAGAAGTATTAAATCT 27601 Query 46965 T-GAAATGTTCAGCAACTCCACGGCCCGTTTGTCCAGTTGCGCCGATAGAATGTGCTTCA 47023 | |||| |||| | ||| | || ||||||||| | || ||| |||||||||| Sbjct 27602 TAGAAA--TTCACAGATTCCCCTTCCTGTTTGTCCAAGAACTCCAATACTATGTGCTTCA 27659 Query 47024 TCCAGGTATAAAT 47036 |||| ||||| || Sbjct 27660 TCCAAGTATATAT 27672 >seq1440344 Length=131763 Score = 95.1 bits (104), Expect = 3e-14 Identities = 332/515 (64%), Gaps = 5/515 (1%) Strand=Plus/Minus Query 363703 GTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCG 363762 || |||||||| |||||| || || || ||| |||| || || | | || || Sbjct 100274 GTTTCGATCCATAATGTTTGTTCA---AATAGTAACATACGTGGAAAAAATGGCACATCA 100218 Query 363763 AATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGT 363822 ||||| | || | ||| | ||||||||| | |||||| || || || || || Sbjct 100217 AATGGTATTGTGCTAATGTTGCGTGTGTTTAATGATACTGATCACTATGTAGATCAAGGA 100158 Query 363823 GGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTT 363882 ||||| || | || || | || ||| | || | ||||| ||||| |||||||| Sbjct 100157 GGAGGCAAAAGAAAGGGTTCCTTCGCTGTATACTTGGAGCCATGGCATGCTGATATTTT- 100099 Query 363883 GAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTC 363942 || ||| | || | | |||||| || || || ||| ||||| | || | ||| Sbjct 100098 GACTTTTTGGATTTGAGAAAAAACCATGGCAAGGAAGAAAACAGTGCAAGATATTTTTTC 100039 Query 363943 TATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCA 364002 |||| || ||| | | || | ||||| ||||| || ||| | | ||||||| Sbjct 100038 TATGGTCTATGGAGTCCAGATCTCTTTATAAAGCGAGTCTAGGACAATGCTACTTGGTCA 99979 Query 364003 CTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCT 364062 | || || || | || | ||| | | | || ||||| || || | || | Sbjct 99978 TTGTTCTGTCCTAATGAGTCTCCTGCATTAGCAGACTATTGGGGGGAAGATTTTGATAAA 99919 Query 364063 CTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTA 364122 ||||| | || |||| | |||| |||||| | ||| | | || |||| || Sbjct 99918 CTATATGTTAAA-ATGAGCTGCAGGGCAAGGCTAGGAAGGTTGTACAAGCTTAGAAACTC 99860 Query 364123 TGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGAT 364182 |||||||| || | || || || || || || || | || |||||||||||||| || Sbjct 99859 TGGTTTGCAATTTTAGAATCTCAAATAGAAACTGGCAATCCTTATATGTTGTACAAGGAC 99800 Query 364183 TCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGG 364217 ||||||||| | ||| || |||||| | |||| Sbjct 99799 TCGTGCAACAGGAAGAGTAATCAGCAGGAATTTGG 99765 >seq54299 Length=354826 Score = 95.1 bits (104), Expect = 3e-14 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 22521 CATTTTCTTTTC-TGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGC 22579 |||| | |||| || ||| |||||||| || |||||| | || ||||| | | |||| Sbjct 292991 CATTCTTTTTTAATGCAGC-TTTTGTGCCATATTTTGGTTGAAGAAACGGGGCTTAATGC 292933 Query 22580 CGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTG 22639 | ||| |||| |||||||||||| | ||| ||||||||||||||||| ||||||| Sbjct 292932 CAGGTTTAACTTTTTCAAATGAGCTGATTTCAAGAGATGAGGGTCTTCATTGTGATTTTG 292873 Query 22640 CGTGTATGCTATATCGGAATCATATCATT 22668 | ||| | || ||| || || || | ||| Sbjct 292872 CTTGTCTCCTTTATAGGTATGATGTTATT 292844 >seq1412493 Length=108133 Score = 93.3 bits (102), Expect = 1e-13 Identities = 323/502 (64%), Gaps = 19/502 (4%) Strand=Plus/Plus Query 363690 AGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCAC 363749 ||| || ||||| || |||||||| ||||||||| || || |||||||| || || || Sbjct 67827 AGGAGGCATTGGAGTTTCGATCCATAATGTTCGTTCA---AATAGTTACATACGTGGAAC 67883 Query 363750 AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTA 363809 | || || ||||| | | || ||| | |||||||| | ||||||| | || Sbjct 67884 AAATGGCACATCAAATGGTATTATGCCAATGTTGTGTGTGTTTAATGATACTGCTCGCTA 67943 Query 363810 CGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCA 363869 || || || || ||||| || | || || || || | | | || | ||||| || Sbjct 67944 TGTAGATCAAGGAGGAGGCAAAAGAAAGGGTGCCTTCGTTGTATACTTGGAGCCATGGCA 68003 Query 363870 TGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGC 363929 ||| |||||||| || ||| | || | | ||||| || || || ||| || Sbjct 68004 TGCTGATATTTT-GACTTTTTGGATTTGAGAAAAAAACATGGCAAGGAAGAAAACAAGGC 68062 Query 363930 ACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGG 363989 | | || |||||||| || ||| || | || | ||||||||||| || ||| Sbjct 68063 AAGATATTTGTTCTATAGTCTATGGATTCCAGATCTCTTTATGAAGCGAGTCCAGGACAA 68122 Query 363990 TAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA-TGTATGGGGTG 364048 | | ||||||| | || | || | || | ||| || | | || ||| ||||| | Sbjct 68123 TGCTACTTGGTCATTGTTCTATCCTAATGAGTCTCCTGGATTAGCAGACTGT-TGGGGGG 68181 Query 364049 ACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTC 364108 | || | || | | ||| || ||||| | |||| ||||| | ||| | | Sbjct 68182 AAGAGTTTGATAAATTGTACCTCAAATATGAGCAGCAGGGCAAGGCCAGGAAGGTTGTAC 68241 Query 364109 CCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATA 364168 || ||||| || |||||||| || | || || ||||| || |||| Sbjct 68242 AAGCTCAGAAACTCTGGTTTGCAATTTTAGAATCTCAGAT-------------CCTTATA 68288 Query 364169 TGTTGTACAAAGATTCGTGCAA 364190 |||||||||| || |||||||| Sbjct 68289 TGTTGTACAAGGACTCGTGCAA 68310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1273955227882848