Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq651746 96.9 3e-15 seq1242598 95.1 9e-15 seq1097520 95.1 9e-15 seq1453129 91.5 1e-13 seq1106687 87.8 1e-12 seq8373 87.8 1e-12 seq510699 86.0 5e-12 seq1203529 82.4 6e-11 seq953416 82.4 6e-11 seq89475 82.4 6e-11 >seq651746 Length=18649 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/227 (69%), Gaps = 18/227 (8%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 ||||| || || ||||| || || ||||||||||||||||||||| |||| | | Sbjct 12986 AGCCGAAGGACAAGATGCAGGGTTGACTCCTTCTGAATGTTGTAATCCGCCAGAGTCCTC 12927 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||| || ||||| |||| | ||||||||| | || | | || Sbjct 12926 CCATCTTCAAGTTGCTTCCCAGCAAAGATCAATCTCTGCTGATCTAGGGGAATCCCTTCC 12867 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA---------T 34080 |||||| | | | || |||| ||||| ||||| ||| ||| | | Sbjct 12866 TTGTCC-TGAATCTTGGCTT--------TCACATTATCAATAGTGTCGGAGCTCTCAACT 12816 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || |||||||||||||||||||| Sbjct 12815 TCGAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACAAAGATTTGCAT 12769 >seq1242598 Length=100980 Score = 95.1 bits (104), Expect = 9e-15 Identities = 164/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||| ||||| || || || ||||| || ||||||||| ||||||||||| || Sbjct 14256 CCTCCTCTGAGCCGGAGGACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCA 14315 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || |||| || | |||||| || ||||| ||||| | |||||| ||| ||| Sbjct 14316 AGAGTG-CGTCCGTCCTCAAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCCGGCGG 14374 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAA---TGGAACTCACACTATCAGTAGAT-T 34075 | | ||| |||||| || || ||||| || | | | | |||| || | | Sbjct 14375 AATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTGTCA---ATAGTGTCAG-AGCTCT 14430 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | ||| | || ||||| || ||||| || || || |||||||| ||||| Sbjct 14431 CAACTTCCAGGGTAATTGTCTTGCCGGTCAGGGTCTTGACAAAGATCTGCAT 14482 >seq1097520 Length=690056 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||||| || ||||| || || ||||| |||||||||||||||||||||||| Sbjct 576911 ACCACCTCTCAAACGAAGCACAAGGTGCAGCGTTGACTCCTTCTGAATGTTGTAATCTGC 576852 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || |||| ||||| ||||| || || || || || | ||| || || || Sbjct 576851 CAAGGTCCGACCGTCCTCCAACTGCTTACCAGCGAAGATAAGCCTCTGTTGGTCTGGGGG 576792 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGC 34078 | || || || ||| ||||| ||||| | | | | |||| || | || Sbjct 576791 GATGCCTTCCTTATCCTGGATTTTGGCCTTAACATTATCAATAGTGTCAG-AGCTCTCAA 576733 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || ||||| ||||| || ||||| |||||||| ||||| Sbjct 576732 CTTCCAAGGTGATCGTTTTGCCGGTGAGGGTTTTAACAAAGATCTGCAT 576684 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||| | || ||||| ||||| | ||| ||||||||||||||||||||| || Sbjct 550414 ACCACCTCTTAAACGAAGCACAAGATGCAACGTTGACTCCTTCTGAATGTTGTAATCAGC 550355 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || |||| |||| ||||| || || || || || | ||| || || || Sbjct 550354 CAAGGTCCGACCGTCCTCCAGCTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCTGGAGG 550295 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGC 34078 | || || |||||| || || ||||| | | | |||||| || | || Sbjct 550294 GATGCCTTCCTTGTCCTGGATCTTCGCCTTAACATTATCAATAGTATCAG-AGCTCTCAA 550236 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || || || ||||| || ||||| |||||||| ||||| Sbjct 550235 CTTCCAAGGTGATCGTCTTGCCGGTCAGAGTTTTAACAAAGATCTGCAT 550187 >seq1453129 Length=93798 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||||||| || ||||| || || ||||| |||||||||||||||||||||||| Sbjct 39935 ACCACCTCTCAGACGAAGCACAAGGTGCAGCGTTGACTCCTTCTGAATGTTGTAATCTGC 39994 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || |||| |||| ||||| || || || || || | ||| || || || Sbjct 39995 CAAGGTCCGACCGTCCTCCAGCTGCTTACCAGCGAAGATAAGCCTCTGTTGGTCTGGGGG 40054 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGC 34078 | || || || ||| ||||| ||||| | | | | |||| || | || Sbjct 40055 GATGCCTTCCTTATCCTGGATTTTGGCCTTAACATTATCAATAGTGTCAG-AGCTCTCAA 40113 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || ||||| || || || ||||| |||||||| ||||| Sbjct 40114 CTTCCAAGGTGATCGTTTTGCCAGTGAGAGTTTTAACAAAGATCTGCAT 40162 >seq1106687 Length=18734 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||| ||||| || || || ||||| || ||||||||| ||||||||||| || Sbjct 13047 CCTCCTCTGAGCCGGAGGACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCA 12988 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || |||| || | |||||| || ||||| ||||| | |||||| ||| ||| Sbjct 12987 AGAGTG-CGTCCGTCCTCAAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCCGGCGG 12929 Query 34020 CACGCTCTCTTTGTC 34034 | | ||| ||||| Sbjct 12928 AATTCCCTCCTTGTC 12914 >seq8373 Length=31397 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||| || || ||||||||||| || || |||||| ||||||||||| || ||| Sbjct 9258 CCTCCTCTTAGACGGAGCACCAGATGCAGGGTAGACTCCTTTTGAATGTTGTAGTCAGCC 9199 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || |||| || | ||||| |||||||| ||||| |||||||| || Sbjct 9198 AGGGTTCTGCCGTCTTCGAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTC 9146 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||| || || || ||||| |||||| |||||||| ||||||||||| || Sbjct 8573 CCACCCCTCAGACGGAGGACGAGATGCAGCGTGGATTCCTTCTGGATGTTGTAATCGGC- 8515 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || |||| |||| || || |||||||||||||| |||||||| || Sbjct 8514 AAGGGTACGGCCGTCCTCCAGCTGTTTTCCGGCAAATATCAGACGCTGCTGGTC 8461 >seq510699 Length=68078 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| ||||| || || |||||||| || || ||||| ||||||||||| || || Sbjct 16260 ACCTCCCCTCAGTCGGAGGACCAGATGCAGGGTCGATTCCTTTTGAATGTTGTAGTCCGC 16201 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || | || |||| ||||| || || ||||||||||||||||| || ||| Sbjct 16200 CAACGTCCGGCCATCTTCCAGCTGCTTTCCCGCGAATATCAGGCGCTGCTGGTCGGGCGG 16141 Query 34020 CACGCTCTCTTTGTC 34034 | | ||| ||||| Sbjct 16140 AATACCCTCCTTGTC 16126 >seq1203529 Length=127907 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||| | || ||||| ||||| | ||| ||||||||||||||||||||| || Sbjct 125469 ACCACCTCTTAAACGAAGCACAAGATGCAACGTTGACTCCTTCTGAATGTTGTAATCAGC 125410 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || |||| |||| ||||| || || || || || | ||| || || || Sbjct 125409 CAAGGTCCGACCGTCCTCCAGCTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCTGGAGG 125350 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGC 34078 | || || |||||| || || ||||| | | | |||||| || | || Sbjct 125349 GATGCCTTCCTTGTCCTGGATCTTCGCCTTAACATTATCAATAGTATCAG-AGCTCTCAA 125291 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || || || ||||| || ||||| |||||||| ||||| Sbjct 125290 CTTCCAAGGTGATCGTCTTGCCGGTCAGAGTTTTAACAAAGATCTGCAT 125242 >seq953416 Length=62966 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| || | || || || ||||| ||| |||||||| || ||||| ||||| Sbjct 23529 CCACCTCTAAGACACAAGACGAGGTGAAGTGTGGATTCCTTCTGGATATTGTAGTCTGCG 23588 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | |||| | || ||||||||||| |||||||| || || |||||||| || Sbjct 23589 AGTGTTCGCCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGCTGCTGGTC 23641 >seq89475 Length=207895 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| || | || || || ||||| ||| |||||||| || ||||| ||||| Sbjct 199433 CCACCTCTAAGACACAAGACGAGGTGAAGTGTGGATTCCTTCTGGATATTGTAGTCTGCG 199492 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | |||| | || ||||||||||| |||||||| || || |||||||| || Sbjct 199493 AGTGTTCGCCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGCTGCTGGTC 199545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 388543166132128