Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1282417 96.9 7e-15 >seq1282417 Length=474670 Score = 96.9 bits (106), Expect = 7e-15 Identities = 226/341 (66%), Gaps = 0/341 (0%) Strand=Plus/Plus Query 149151 TCATTTGGACCGCTGAGATTCGTCGGCATGACTGAGACGAAATTACATCCATATTGTTTT 149210 ||||||||||| ||||| || |||||| | || | || ||| || || Sbjct 361555 TCATTTGGACCATACAGATTGGTGGGCATGCCAGAAATCGCATCCCATTTGTACTGAAGA 361614 Query 149211 CTGTAAGCATCACACATCTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTG 149270 | ||||| | ||||||| || || || || || || || ||||| | ||||||| Sbjct 361615 CGATAAGCTTGGCACATCTTTATCCCAGCAATCTTAGCAATAGCGTACCACTCGTTAGTG 361674 Query 149271 GGTTCGAGAAATCCTGTCATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGG 149330 || || ||| || |||| || |||||| ||||||| | | || ||||| Sbjct 361675 GGCTCCAGAGGACCAGTCAAAAGTGCTTCTTCTGTGATAGGTTGCGGGGCAAACTTTGGA 361734 Query 149331 TAAATGCAACTGCTACCGAGAAACACGAGTTTTTTCACTCCGAACATTTTGGACGCATGA 149390 ||||||||| ||| ||||||| || || |||||||| | | | | |||| Sbjct 361735 TAAATGCAAGAAGAACCCAGAAACAGTAGCTTCTTCACTCCATTCTTATAGCTTGCATCG 361794 Query 149391 ATGACATTCGTCTGAATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGTTC 149450 || ||||| || |||||| ||||||| | || ||||| | | | | ||||| Sbjct 361795 ATCACATTTGTTTGAATCTGCAGATTAATGGCTATGAAATCAGCAGGGTAAGTATTGTTG 361854 Query 149451 GCGTGAATACCTCCTACTTTTGCAGCCGCGAGAAATACGTA 149491 || ||||||||||| ||||| || || |||| || ||| || Sbjct 361855 GCATGAATACCTCCAACTTTCGCTGCTGCGACAATTACATA 361895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1078003499378400