Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq335002 98.7 1e-15 >seq335002 Length=192544 Score = 98.7 bits (108), Expect = 1e-15 Identities = 465/733 (63%), Gaps = 7/733 (1%) Strand=Plus/Minus Query 114512 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 114571 || || || ||||| | || || | || ||| || ||||| |||| || | ||| Sbjct 28373 GTATATTCAATAATCTTTGTGCAGAGGTTAGAAGATTTGATGGTTCCCAGATTTTGCTGA 28314 Query 114572 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631 || ||| ||||||| ||||||| | ||||||||||| | || || || | || Sbjct 28313 TTGCTTTTTCTGTTACAGATATCCTTGAAGAGCATGTATGGATTTCCTGTTTCTATCTGA 28254 Query 114632 GACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTC 114690 | | ||||||| ||| | | || | | ||| ||| || || ||||| Sbjct 28253 GCTTCCAGAATAGAAAACCAAAGCTTCTGTGCCTGT-ACAACCTTTTTTGCCTTACCCTC 28195 Query 114691 CTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG 114750 | ||| || || |||| || ||||||| ||||||||| | || | ||||| || Sbjct 28194 TTGCTCATATTTCATGTACAGTTCTTCAAATTCTTCACCCCAGCAATCAGCAAGCCCGGG 28135 Query 114751 TGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAG 114810 || | || || || || | | || | | | ||||| || | ||||| ||||| Sbjct 28134 AGCTTCATTGGGACAAAATAATGTCCGTGTAGAATTCTCCTGGACCCTTTTCATAAAGAG 28075 Query 114811 GTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATT 114870 |||| | | ||| || || | || ||||| || | | ||||| | ||| || || Sbjct 28074 GTCTAGCACCCAAAGTGCAAAAAATAGATCACGTGCTCTATTCTCTTCCTTCCCATGGTT 28015 Query 114871 GAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGAT 114930 | |||||||||||| || | | ||| || ||||| || || ||||||| || | Sbjct 28014 CTTTCTCAACTCCAAAAACTCAAAAACATCTGCATGCCATGGCTCTAGGTACATGGCAAA 27955 Query 114931 TGACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCG 114987 || ||||| | | ||| | || | ||||| | || || |||| ||||| | Sbjct 27954 TGCACCCTTCCTTTTGCCTCCACCTTGATCAACATAACGAGCAGTATCATTGAATACCCT 27895 Query 114988 AAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGA-GACTTATTGG 115046 | |||||| | ||||||| ||| ||||| || || || ||| | ||| || | Sbjct 27894 CAACATTGGCACAATACCATTCGATGTACCATTAGTTCCTCGGATATAACTACTGGTT-G 27836 Query 115047 CTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACT 115106 | | | | ||| | | ||||| || || || | || ||| || || | Sbjct 27835 CACGAATGTTATGTACTGAAACACCAAGTCCTCCAGCTGATTTGCTTATTACAGCACATT 27776 Query 115107 CCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGC 115166 || | ||| | | || ||||| || || ||| | || | | ||||||||||| Sbjct 27775 CCTTTAGAGTATCATATATCCCCTCAATGCTATCATCTTTCATACAAACAAGGAAGCAGC 27716 Query 115167 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA 115226 | || |||||||||||||| ||| | ||||| || || || | || ||| | ||| Sbjct 27715 TACTCAACTGTGGCCTTGGTGTCCCAACATTGAAAAGTGTAGGAGAAGCATGGGTAAACC 27656 Query 115227 TACCTTGGGACAT 115239 || ||| ||||| Sbjct 27655 AACGTTGTGACAT 27643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584208356149120