Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq335002 111 2e-19 seq613168 91.5 1e-13 >seq335002 Length=192544 Score = 111 bits (122), Expect = 2e-19 Identities = 202/296 (68%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 || ||||| || || ||||| || || || || | || || ||| | |||| ||||| Sbjct 27847 TATATCCGAGGAACTAATGGTACATCGAATGGTATTGTGCCAATGTTGAGGGTATTCAAT 27906 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | | || || || || || || ||||| || | ||||||||| | || || | || Sbjct 27907 GATACTGCTCGTTATGTTGATCAAGGTGGAGGCAAAAGGAAGGGTGCATTTGCCATGTAC 27966 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| ||||| || || || | || | || || |||||||||| || || Sbjct 27967 CTAGAGCCATGGCATGCAGATGTTTTTGAGTTTTTGGAGTTGAGAAAGAACCATGGGAAG 28026 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || | | || || | || || || | || || ||||||| |||||| ||||||||| Sbjct 28027 GAAGAGAATAGAGCACGTGATCTATTTTTTGCACTTTGGGTGCTAGACCTCTTTATGAAA 28086 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACT 94367 | ||| || | || || | ||| | ||||||||||||||| |||||| || Sbjct 28087 AGGGTCCAGGAGAATTCTACACGGACATTATTTTGTCCCAATGAAGCTCCCGGGCT 28142 >seq613168 Length=425085 Score = 91.5 bits (100), Expect = 1e-13 Identities = 344/532 (65%), Gaps = 7/532 (1%) Strand=Plus/Plus Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| || || || |||||||| || || || | || || ||| | || || || || Sbjct 409052 TACATACGTGGAACAAATGGCACATCAAATGGTATTGTGCCAATGTTGCGTGTGTTTAAT 409111 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | | || ||||| || || || || || || | || |||||| | ||||| | || Sbjct 409112 GATACTGCTCGCTATGTAGATCAAGGAGGAGGCAAAAGCAAGGGTGCCTTCGCTATATAC 409171 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAA--CCACGGCA 94249 | ||||| ||||| || || | | |||| | | || |||| || ||| |||| Sbjct 409172 TTGGAGCCATGGCATGCCGATATTTTGACTTTT-TGGTTTTGAGAAAAAAAACCATGGCA 409230 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || | ||||| ||||| | ||||| | ||| || | | ||| || ||||||| Sbjct 409231 AGGAAGAAAACAGGGCAAGAGATTTGTTCTATGGTCTATGTATTCTAGATCTCTTTATGA 409290 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | || ||| || | || | | ||| | || ||||| ||||| | ||| || | Sbjct 409291 AGCGAGTCTAGGACAATGCTACTTGGTCATTGTTCTGTCCTAATGAGTCTCCTAGATTAG 409350 Query 94370 CCGAC-GTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGT-TACGAATCGCAGGGCAA 94427 | ||| ||| | || | |||| || | ||||| ||| || || ||||||||| Sbjct 409351 CAGACTGTTGGGGGGAAGAGTTT-GATAAATTGTAC-CTCAAATATGAGCAGCAGGGCAA 409408 Query 94428 GGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGA 94487 ||||||||||||| | | ||| ||| || ||| | || | || ||| | || Sbjct 409409 GGCCAGGAAGGTTGTACAAGCTCAGAAACTCTGGTTTGCAATTTTAGAATCTCAGATAGA 409468 Query 94488 GACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCA 94547 || | | || || || |||| ||||||||| |||| ||| ||| ||| || | Sbjct 409469 AACTAGCAATCCTTATATGTTGTACAAGGACTCATGCAACAGGAAGATCAATCAGTAGAA 409528 Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACT 94599 | || |||||| || ||||| ||||| | | | ||||| | ||| Sbjct 409529 TTTGGGAACAATCAAGTCTTCAAATCTTTGCACAAAAAATATCGAGAACACT 409580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483836420205440