Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq335002 98.7 1e-15 >seq335002 Length=192544 Score = 98.7 bits (108), Expect = 1e-15 Identities = 473/738 (64%), Gaps = 17/738 (2%) Strand=Plus/Minus Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 || || || ||||| | || || | || ||| || ||||| |||| || | ||| Sbjct 28373 GTATATTCAATAATCTTTGTGCAGAGGTTAGAAGATTTGATGGTTCCCAGATTTTGCTGA 28314 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||| ||||||| ||||||| ||||||| ||||| | || || || | || Sbjct 28313 TTGCTTTTTCTGTTACAGATATCCTTGAAGAGCATGTATGGATTTCCTGTTTCTATCTGA 28254 Query 116593 GACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTC 116651 | | ||||||| ||| | | || | | ||| ||| || || ||||| Sbjct 28253 GCTTCCAGAATAGAAAACCAAAGCTTCTGTGCCTGT-ACAACCTTTTTTGCCTTACCCTC 28195 Query 116652 CTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTG 116710 | ||| || || |||| || | ||||| ||||||||| |||| || | ||||| | Sbjct 28194 TTGCTCATATTTCATGTACAGTTCTTCAAATTCTTCACCC-CAGCAATCAGCAAGCCCGG 28136 Query 116711 GTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 116770 | || | || ||||| || | | || | | | ||||| |||| ||||| |||| Sbjct 28135 GAGCTTCATTGGGACAAAATAATGTCCGTGTAGAATTCTCCTGGACCCTTTTCATAAAGA 28076 Query 116771 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 116830 ||||| | | ||| || || | || ||||| || | | ||||| | ||| || | Sbjct 28075 GGTCTAGCACCCAAAGTGCAAAAAATAGATCACGTGCTCTATTCTCTTCCTTCCCATGGT 28016 Query 116831 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890 | | |||||||||||| || | | ||| || ||||| || || ||||||| || | Sbjct 28015 TCTTTCTCAACTCCAAAAACTCAAAAACATCTGCATGCCATGGCTCTAGGTACATGGCAA 27956 Query 116891 TTGACCCCTTGC---GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGC 116947 || ||||| | | ||| | || | ||||| | || || | || ||||| | Sbjct 27955 ATGCACCCTTCCTTTTGCCTCCACCTTGATCAACATAACGAGCAGTATCATTGAATACCC 27896 Query 116948 GAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGA-GACTTGTTG 117006 | |||||| | ||||||| ||| ||||| || || || ||| | ||| ||| Sbjct 27895 TCAACATTGGCACAATACCATTCGATGTACCATTAGTTCCTCGGATATAACTACTGGTT- 27837 Query 117007 GCTCTGACATCGTGGATGTGC----ATACCAATACCCCCTGCCCACTTTGAGATTTGTGC 117062 || | || || || |||| | | ||||| || || || | || ||| || Sbjct 27836 GCAC-GA-AT-GT-TATGTACTGAAACACCAAGTCCTCCAGCTGATTTGCTTATTACAGC 27781 Query 117063 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 117122 || ||| | ||| | | || ||||| || || ||| | || | | ||||| Sbjct 27780 ACATTCCTTTAGAGTATCATATATCCCCTCAATGCTATCATCTTTCATACAAACAAGGAA 27721 Query 117123 GCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGAT 117182 |||||| || |||||||||||||| ||| | ||||| || || || | || ||| | Sbjct 27720 GCAGCTACTCAACTGTGGCCTTGGTGTCCCAACATTGAAAAGTGTAGGAGAAGCATGGGT 27661 Query 117183 GAACATACCTTGGGACAT 117200 ||| || ||| ||||| Sbjct 27660 AAACCAACGTTGTGACAT 27643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 600006483258240