Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1153735 127 2e-24 seq438478 86.0 8e-12 >seq1153735 Length=80411 Score = 127 bits (140), Expect = 2e-24 Identities = 256/370 (69%), Gaps = 10/370 (3%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| || || ||||| | | || ||||||| |||||| | | || ||||| Sbjct 20409 CGATCAAAACGCCCCGGGCGCAACAAAGCAGCATCAAGTATATCAGCCCTGTTGGTTGCA 20468 Query 15945 GCGATGACAACAATACCTGT-TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 || || |||| ||||| || ||| | ||||| |||||||| || || | |||||| || Sbjct 20469 GCAATCACAATGATACCAGTGTTCCCT-TCAAAGCCATCCATTTCGGTAAGAAGCTGATT 20527 Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCTGG-CATACCACCAGCACTGCGTTGCTTTCCCA 16062 || |||||||| || |||||||| || | || |||| | | ||| | || | Sbjct 20528 AAGGGTTTGTTCTCGCTCATCATTTCCTCCACCTATT-CCAGTTCCTCTCTGCCTACCAA 20586 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGA 16122 | |||||||| ||||| | ||| || ||||| || |||||| || || || | Sbjct 20587 CTGCATCAATTTCATCCACGAAAACAATGCAAGGGGCATTTTCCTTGGCCTTTTTGAACA 20646 Query 16123 GATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180 | || || ||| || | || || | ||||||||||||||| ||||| | | | | Sbjct 20647 GGTCACG--CACTCTAGATGCTCCAATACCAACAAACATCTCAACAAACTCAGAACCTG- 20703 Query 16181 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 | || | || ||| || ||| || ||| || |||||||| ||| || | |||||| | Sbjct 20704 AGATAGAGAAGAAAGGTACACCAGCTTCCCCTGCAATGGCCTTGGCTAGCAAAGTCTTCC 20763 Query 16240 CCGTACCTGG 16249 | || ||||| Sbjct 20764 CAGTCCCTGG 20773 >seq438478 Length=143741 Score = 86.0 bits (94), Expect = 8e-12 Identities = 136/189 (72%), Gaps = 11/189 (6%) Strand=Plus/Minus Query 13642 CACCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTC--TACGGAGTCTCAAAGGT 13699 |||| || || ||| | || |||||| |||| | ||| || | ||||| ||| | Sbjct 97557 CACCTCAGAATGAGAACACCCCCTTCCACCCTAGAA--GTCCTTATGCTGTCTCCAAGCT 97500 Query 13700 TGCGGCACATTGGC--TC-GTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTC 13756 ||| || |||||| || || ||| ||| | || | || ||| ||||||| ||| Sbjct 97499 TGCAGCCCATTGGTATTCTGT---GAACTACAGAGAAGCATATGGAATGTTTGCCTGCAA 97443 Query 13757 CGGAATCCTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGAT 13816 || ||||||||||||||||| || || || |||||| | |||||||||| | |||||| Sbjct 97442 TGGGATCCTCTTCAACCATGAGTCCCCAAGGAGAGGTGAAAACTTTGTGACAAGGAAGAT 97383 Query 13817 TACCGAGGG 13825 ||| |||| Sbjct 97382 CACC-AGGG 97375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607082466894080