Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq561264 107 2e-18 >seq561264 Length=41373 Score = 107 bits (118), Expect = 2e-18 Identities = 253/380 (67%), Gaps = 4/380 (1%) Strand=Plus/Minus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||| |||||||| || || | ||||| ||||| ||||| || | ||||| || | | Sbjct 23926 GAACCCGTCCATCTCCGTCAACAGCTGATTGATTGTCTGCTCCCTTTCATCATT--ACCG 23869 Query 11652 CATACCA--CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATA 11709 | | | || ||| | || | | || || |||||||| |||||||| || ||||| Sbjct 23868 CCGCCAAGGCCAGCCCCCCTCTGCCTCCCTACCGCGTCAATTTCATCGATAAAGACGATG 23809 Query 11710 CACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCT 11769 || || ||||| |||| ||||| || || ||||| || ||| || ||||| Sbjct 23808 CAGGGCGCCTTGGCCTTGGCCTTCTCGAACAGGTCCCGTACCCGGGACGCACCTACACCG 23749 Query 11770 ACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCA 11829 ||||| | ||| ||||| | | || | || || |||||| || | ||| || Sbjct 23748 ACGAAGAGCTCGACGAACTCCGACGCCGCGCAGGAAAAGAAGGGGACCCCGGCCTCCCCT 23689 Query 11830 GCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCA 11889 | || || || || || |||||||| ||||| || || | ||| | | | | || Sbjct 23688 GAGACAGCCCGGGCCAGTAGAGTCTTGCCCGTCCCCGGCGGACCTACCAACAAGCATCCC 23629 Query 11890 CGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATC 11949 |||||||||||||||| || || ||||| || || | ||| ||||| | | Sbjct 23628 TTGGGGATCTTGGCACCAAGGGCAGTATACTTATCAGGGTTTTTCAAGAAATCCACCACC 23569 Query 11950 TCCTCAAGTTCCTCCTTGGC 11969 |||| ||| ||| |||||| Sbjct 23568 TCCTGAAGCTCCAGCTTGGC 23549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576015111939200