Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1153735 123 3e-23 seq1360730 107 2e-18 seq852098 107 2e-18 seq786183 107 2e-18 seq286074 107 2e-18 seq335002 105 8e-18 seq1275331 91.5 2e-13 seq445713 82.4 9e-11 seq438478 82.4 9e-11 >seq1153735 Length=80411 Score = 123 bits (136), Expect = 3e-23 Identities = 253/368 (69%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 |||||||| || || || || | | || ||||||| |||||| | | || || || Sbjct 20409 CGATCAAAACGCCCCGGGCGCAACAAAGCAGCATCAAGTATATCAGCCCTGTTGGTTGCA 20468 Query 9252 GCGATGACAACAATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310 || || |||| ||||| || ||| | ||||| |||||||| || || | ||| || || Sbjct 20469 GCAATCACAATGATACCAGTGTTCCCT-TCAAAGCCATCCATTTCGGTAAGAAGCTGATT 20527 Query 9311 AATAGTTTGTTCCCGTTCATCATTCGCTGG-CATACCACCAGCACTGCGTTGCTTTCCCA 9369 || |||||||| || |||||||| || | || |||| | | ||| | || | Sbjct 20528 AAGGGTTTGTTCTCGCTCATCATTTCCTCCACCTATT-CCAGTTCCTCTCTGCCTACCAA 20586 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | |||||||| ||||| | ||| ||||| || || |||||| ||| ||| || | Sbjct 20587 CTGCATCAATTTCATCCACGAAAACAATGCAAGGGGCATTTTCCTTGGCCTTTTTGAACA 20646 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 | || || || || || || | ||||||||||||||| ||||| | | | | | Sbjct 20647 GGTCACGCACTCTAGATGCTCCAATACCAACAAACATCTCAACAAACTCAGAACCTG-AG 20705 Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 || | || ||| || ||| || ||| || |||||||| ||| || | |||||| || Sbjct 20706 ATAGAGAAGAAAGGTACACCAGCTTCCCCTGCAATGGCCTTGGCTAGCAAAGTCTTCCCA 20765 Query 9549 GTACCTGG 9556 || ||||| Sbjct 20766 GTCCCTGG 20773 >seq1360730 Length=15079 Score = 107 bits (118), Expect = 2e-18 Identities = 189/273 (69%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 9204 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9263 || || ||||| | || |||| || | |||||| ||||| || || || ||||||| Sbjct 4858 CCAGGCCGAAGTAAAGCTGCATCCAGCACATCAACTCGATTGGTGGCTGCTATGACAATC 4799 Query 9264 ATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTC 9322 | || || ||| | ||||| ||||||||||| || | | |||||| | || ||||| Sbjct 4798 ACTCCAGTGTTCCCT-TCAAATCCATCCATCTCAGTAAGCAATTGGTTCAATGTCTGTTC 4740 Query 9323 CCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTC 9382 ||||||||||| || | || || | | ||| ||||||| ||||| | || Sbjct 4739 TCGTTCATCATTGCCTCCGCCAATTCCTGCTCCCCTCTGCCTTCCCACTGCATCGAGTTC 4680 Query 9383 ATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCT 9442 ||| ||||| | |||||| || |||||| || | | || ||||| |||| ||| Sbjct 4679 ATCTATGAAAATAATACAAGGCGCATTTTCCTTTGCCTTCTTGAAAAGATCACGAATCCT 4620 Query 9443 TTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||| || || || ||||||||||| | ||| Sbjct 4619 AGAGGCTCCTACTCCTACAAACATCTCTATAAA 4587 >seq852098 Length=18081 Score = 107 bits (118), Expect = 2e-18 Identities = 189/273 (69%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 9204 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9263 || || ||||| | || |||| || | |||||| ||||| || || || ||||||| Sbjct 10219 CCAGGCCGAAGTAAAGCTGCATCCAGCACATCAACTCGATTGGTGGCTGCTATGACAATC 10278 Query 9264 ATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTC 9322 | || || ||| | ||||| ||||||||||| || | | |||||| | || ||||| Sbjct 10279 ACTCCAGTGTTCCCT-TCAAATCCATCCATCTCAGTAAGCAATTGGTTCAATGTCTGTTC 10337 Query 9323 CCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTC 9382 ||||||||||| || | || || | | ||| ||||||| ||||| | || Sbjct 10338 TCGTTCATCATTGCCTCCGCCAATTCCTGCTCCCCTCTGCCTTCCCACTGCATCGAGTTC 10397 Query 9383 ATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCT 9442 ||| ||||| | |||||| || |||||| || | | || ||||| |||| ||| Sbjct 10398 ATCTATGAAAATAATACAAGGCGCATTTTCCTTTGCCTTCTTGAAAAGATCACGAATCCT 10457 Query 9443 TTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||| || || || ||||||||||| | ||| Sbjct 10458 AGAGGCTCCTACTCCTACAAACATCTCTATAAA 10490 >seq786183 Length=135185 Score = 107 bits (118), Expect = 2e-18 Identities = 189/273 (69%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 9204 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9263 || || ||||| | || |||| || | |||||| ||||| || || || ||||||| Sbjct 129744 CCAGGCCGAAGTAAAGCTGCATCCAGCACATCAACTCGATTGGTGGCTGCTATGACAATC 129685 Query 9264 ATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTC 9322 | || || ||| | ||||| ||||||||||| || | | |||||| | || ||||| Sbjct 129684 ACTCCAGTGTTCCCT-TCAAATCCATCCATCTCAGTAAGCAATTGGTTCAATGTCTGTTC 129626 Query 9323 CCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTC 9382 ||||||||||| || | || || | | ||| ||||||| ||||| | || Sbjct 129625 TCGTTCATCATTGCCTCCGCCAATTCCTGCTCCCCTCTGCCTTCCCACTGCATCGAGTTC 129566 Query 9383 ATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCT 9442 ||| ||||| | |||||| || |||||| || | | || ||||| |||| ||| Sbjct 129565 ATCTATGAAAATAATACAAGGCGCATTTTCCTTTGCCTTCTTGAAAAGATCACGAATCCT 129506 Query 9443 TTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||| || || || ||||||||||| | ||| Sbjct 129505 AGAGGCTCCTACTCCTACAAACATCTCTATAAA 129473 >seq286074 Length=7140 Score = 107 bits (118), Expect = 2e-18 Identities = 189/273 (69%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 9204 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9263 || || ||||| | || |||| || | |||||| ||||| || || || ||||||| Sbjct 2945 CCAGGCCGAAGTAAAGCTGCATCCAGCACATCAACTCGATTGGTGGCTGCTATGACAATC 3004 Query 9264 ATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTC 9322 | || || ||| | ||||| ||||||||||| || | | |||||| | || ||||| Sbjct 3005 ACTCCAGTGTTCCCT-TCAAATCCATCCATCTCAGTAAGCAATTGGTTCAATGTCTGTTC 3063 Query 9323 CCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTC 9382 ||||||||||| || | || || | | ||| ||||||| ||||| | || Sbjct 3064 TCGTTCATCATTGCCTCCGCCAATTCCTGCTCCCCTCTGCCTTCCCACTGCATCGAGTTC 3123 Query 9383 ATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCT 9442 ||| ||||| | |||||| || |||||| || | | || ||||| |||| ||| Sbjct 3124 ATCTATGAAAATAATACAAGGCGCATTTTCCTTTGCCTTCTTGAAAAGATCACGAATCCT 3183 Query 9443 TTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||| || || || ||||||||||| | ||| Sbjct 3184 AGAGGCTCCTACTCCTACAAACATCTCTATAAA 3216 >seq335002 Length=192544 Score = 105 bits (116), Expect = 8e-18 Identities = 523/824 (63%), Gaps = 9/824 (1%) Strand=Plus/Minus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| | || || || || |||||||| || || || | || || | ||| Sbjct 28430 ACATATCTAGGCAGCGCAATAGATGCCAAGTTACAGACTGTTGTTTCTATTGGACTTGTA 28371 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 || || | ||| | ||| || | ||| ||| || || || |||| ||| | || || Sbjct 28370 TATTCAATAATCTTTGTGCAGAGGTTAGAAGATTTGATGGTTCCCAGATTTTGCTGATTG 28311 Query 106568 CTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAC 106627 || ||| |||| || ||||||| |||||||||| || | || || || |||| | Sbjct 28310 CTTTTTCTGTTACAGATATCCTTGAAGAGCATGTATGGATTTCCTGTTTCTATCTGAGCT 28251 Query 106628 TTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGC 106686 | ||||| | ||| | | || | | ||| ||||| || ||| ||||| Sbjct 28250 TCCAGAATAGAAAACCAAAGCTTCTGTGCCTG-TACAACCTTTTTTGCCTTACCCTCTTG 28192 Query 106687 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTG 106745 ||| || || |||| || ||||||| || |||||| | || || | || || || | Sbjct 28191 CTCATATTTCATGTACAGTTCTTCAAATTCTTCACCC-CAGCAATCAGCAAGCCCGGGAG 28133 Query 106746 CCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGT 106805 | | | ||||| || | | || | | | ||||| |||| ||||| || |||| Sbjct 28132 CTTCATTGGGACAAAATAATGTCCGTGTAGAATTCTCCTGGACCCTTTTCATAAAGAGGT 28073 Query 106806 CTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGA 106865 || | | ||| || | |||| ||||| | | | |||||| | || ||||| Sbjct 28072 CTAGCACCCAAAGTGCAAAAAATAGATCACGTGCTCTATTCTCTTCCTTCCCATGGTTCT 28013 Query 106866 GTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 106925 || ||||| | ||||| | | ||| || ||||||||||| || || | || | | Sbjct 28012 TTCTCAACTCCAAAAACTCAAAAACATCTGCATGCCATGGCTCTAGGTACATGGCAAATG 27953 Query 106926 ATCCCT---TTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 106982 |||| || | ||| |||||| ||||| || || || | || ||||| | | Sbjct 27952 CACCCTTCCTTTTGCCTCCACCTTGATCAACATAACGAGCAGTATCATTGAATACCCTCA 27893 Query 106983 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTC 107042 |||||| | |||||||| ||| |||||| || || || ||| | | | || | Sbjct 27892 ACATTGGCACAATACCATTCGATGTACCATTAGTTCCTCGGATATAACTACTGGTTGCAC 27833 Query 107043 TCACATCATGGATGTGCATC-CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCC 107101 | | ||| | || | | |||| || ||||| | || ||| ||||| ||| Sbjct 27832 GAATGTTATGTA-CTGAAACACCAAGTCCTCCAGCTGATTTGCTTATTACAGCACATTCC 27774 Query 107102 GTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTG 107161 | ||||| |||| || || | || || || || | | ||||||||| || Sbjct 27773 TTTAGAGTATCATATATCCCCTCAATGCTATCATCTTTCATACAAACAAGGAAGCAGCTA 27714 Query 107162 GACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA 107221 || ||| || |||||||| ||| ||||||| || || || | || || | ||| | Sbjct 27713 CTCAACTGTGGCCTTGGTGTCCCAACATTGAAAAGTGTAGGAGAAGCATGGGTAAACCAA 27654 Query 107222 CCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTC 107265 | ||| ||||| | ||| || | | | ||||||||||| Sbjct 27653 CGTTGTGACATTAACTGGTAAGTTTTGATAGCTGAATCAATGTC 27610 >seq1275331 Length=493391 Score = 91.5 bits (100), Expect = 2e-13 Identities = 242/362 (67%), Gaps = 17/362 (5%) Strand=Plus/Plus Query 6949 CACCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTC--TACGGAGTCTCAAAGGT 7006 |||| || || ||| | || |||||| ||||| | ||| || | ||||| ||| | Sbjct 58850 CACCTCAGAATGAGAACACCCCCTTCCACCCAAGAA--GTCCTTATGCTGTCTCCAAGCT 58907 Query 7007 TGCGGCACATTGGC--TC-GTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTC 7063 ||| || |||||| || ||||| |||| | || | || ||| ||||||| | | Sbjct 58908 TGCAGCCCATTGGTATTCTGTCAA---TTACAGAGAAGCATATGGAATGTTTGCCTCCAA 58964 Query 7064 CGGAATCCTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGAT 7123 ||| ||||||||||| || ||||| || || |||||| ||||||| |||| |||||| Sbjct 58965 CGGGATCCTCTTCAATCACGAATCCCCAAGGAGAGGTGAGAACTTTGTGACAAGGAAGAT 59024 Query 7124 TACCGAGGGTATCAAACAAATCATGAAGGG---TGAAAAGGAGTTCATTGAATTGGGTAA 7180 ||| || | | ||||| | || | | ||| ||| | | ||||| || Sbjct 59025 CACCAGGGCTGTGGGGAGAATCAAAATTGGGCTTCAGAAGAAGT---TGTATTTGGGCAA 59081 Query 7181 CATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCAT 7240 | || || || |||||||| || ||||||||| || || |||||| | || Sbjct 59082 TCTCAAGGCCTCCAGGGATTGGGGATTTGCTGGGGACTATGTGGAGGCAATGTGGTTGAT 59141 Query 7241 GCTTCAACAAGAGGAAGCCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAG-TGA 7299 | | || ||||| | |||| || || || || || || | ||| | |||| | | ||| Sbjct 59142 GTTGCAGCAAGATAAGCCCGATGACTACGTTGTTGCCACTGATGATAGCCATACCGTTGA 59201 Query 7300 GG 7301 || Sbjct 59202 GG 59203 >seq445713 Length=275225 Score = 82.4 bits (90), Expect = 9e-11 Identities = 130/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT-GTGTACTCTA 106514 ||| || || |||||||||||||| ||| | || | || | | || |||||||| | Sbjct 8894 TGGCAGAGCAATTGATGCCAAATTACAACCTGCACTTTC-TGTTGGGCTAGTGTACTCGA 8836 Query 106515 AAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTT 106574 ||||||||| || | || ||| ||||| || |||||||||| || || ||||| Sbjct 8835 TAATTTCTGTGCAAAGATTTGAAGACTTAACTGTTCCCAAATTCTACTGATTGCTCTTCC 8776 Query 106575 TGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAA 106634 ||||||||| || ||||| | ||| || || | | || || |||| || | | || Sbjct 8775 TGTTGCACGAGTCGTTGTACAACATATAAGGATTGCTAGTTTCTATCTGAGATTCTAAAA 8716 Query 106635 TTGC 106638 |||| Sbjct 8715 TTGC 8712 >seq438478 Length=143741 Score = 82.4 bits (90), Expect = 9e-11 Identities = 134/187 (72%), Gaps = 7/187 (4%) Strand=Plus/Minus Query 6949 CACCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTC--TACGGAGTCTCAAAGGT 7006 |||| || || ||| | || |||||| |||| | ||| || | ||||| ||| | Sbjct 97557 CACCTCAGAATGAGAACACCCCCTTCCACCCTAGAA--GTCCTTATGCTGTCTCCAAGCT 97500 Query 7007 TGCGGCACATTGGCTCGTCAAA-AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCG 7065 ||| || |||||| | || || ||| | || | || ||| ||||||| ||| | Sbjct 97499 TGCAGCCCATTGG-TATTCTGTGAACTACAGAGAAGCATATGGAATGTTTGCCTGCAATG 97441 Query 7066 GAATCCTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTA 7125 | ||||||||||||||||| || || || |||||| | ||||||| |||| |||||| | Sbjct 97440 GGATCCTCTTCAACCATGAGTCCCCAAGGAGAGGTGAAAACTTTGTGACAAGGAAGATCA 97381 Query 7126 CCGAGGG 7132 || |||| Sbjct 97380 CC-AGGG 97375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576997800511360