Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09]
1,760,464 sequences; 22,103,635,615 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq224353 127 2e-24
seq236632 111 2e-19
seq1488072 102 9e-17
seq324985 102 9e-17
seq54299 91.5 2e-13
seq1692948 82.4 9e-11
>seq224353
Length=132916
Score = 127 bits (140), Expect = 2e-24
Identities = 171/238 (72%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 37397 AATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATC 37456
|||||| |||||||| || || || || ||||| | | |||| | | ||| || ||
Sbjct 9219 AATTGTCTCAATTGCATTGAATAGGTGATTATTTTCCTTAGGATCTTTGACATATGTTTC 9160
Query 37457 AATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516
| |||||||||||||| || ||||||||||||||||| || ||||| || ||||||||
Sbjct 9159 CAACAGTAAACTATACATCTCTGAGTGAATATTTTCAATGGCAATCTGGAACCCATAAAA 9100
Query 37517 ACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAAC 37576
| ||| || | | |||||| || || | || | | |||||| | ||||| |||
Sbjct 9099 TGCACGAGCCTCTGGAACTTGAACTTCTTTCATGAAACGCCTAGCTAGGATTTCAAGAAC 9040
Query 37577 TATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634
||||||||| | |||||||| ||||| ||| | || || || | ||||||
Sbjct 9039 AATCCCATCAAATGTAGCAAAGAATGCAAGGTCATGAGTGATGAAGTGCTTCTCATCA 8982
>seq236632
Length=228148
Score = 111 bits (122), Expect = 2e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 37404 TCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGT 37463
||||||||||| || | || ||||| | | |||| | | ||| || || | |||
Sbjct 117309 TCAATTGCTTTGAACAAGTGATTATTTTCCTTAGGATCTTTGACATATGTTTCCAACAGT 117368
Query 37464 AAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTA 37523
||||| ||||| || ||||||||||||||||| || ||||| || |||||||| | |
Sbjct 117369 AAACTGTACATCTCTGAGTGAATATTTTCAATGGCAATCTGGAACCCATAAAATGCACGA 117428
Query 37524 GCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCA 37583
|| | || | ||||| || || | || | | |||| | ||||| ||| ||||||
Sbjct 117429 GCCTTTGAAACTTGAAATTCTTTCATGAAACGCCTAGCAAGGTTTTTGAGAACAATCCCA 117488
Query 37584 TCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634
||| || |||||||| ||||| |||| | || || || | ||||||
Sbjct 117489 TCAGAGGCAGCAAAGAATGCAAGGACATGACTGATGAAGTGCTTCTCATCA 117539
>seq1488072
Length=30855
Score = 102 bits (112), Expect = 9e-17
Identities = 171/242 (71%), Gaps = 9/242 (4%)
Strand=Plus/Minus
Query 37370 CCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttttt 37429
||||||||| || ||| || | ||| |||||||||||| || || || | ||||
Sbjct 29358 CCAATCTGCTTTC--TTTGCCAGA--CAACTGTTTCAATTGCATTGAACAG-GTGATTTT 29304
Query 37430 ttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489
||| | | |||| | | ||| || || | |||||| | ||||| || ||||||||| |
Sbjct 29303 TTCCTTAGGATCTTTGACATATGTTTCCAACAGTAAATTTTACATCTCTGAGTGAATACT 29244
Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAA- 37548
|||||| || ||||| || |||| ||| | ||| || | |||||| || || |
Sbjct 29243 TTCAATGGCAATCTGGAACCCATGAAATGCACGAGCCTCTCGAACTTGAACTTCTTTCAT 29184
Query 37549 -AAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGA 37607
|||| | | ||||| |||||| ||| ||||||||| || ||||||| |||||
Sbjct 29183 GAAAAACCC--AGCTAGGTTTTCGAGAACAATCCCATCAGAGGCAACAAAGAATGCAAGG 29126
Query 37608 AC 37609
||
Sbjct 29125 AC 29124
>seq324985
Length=9845
Score = 102 bits (112), Expect = 9e-17
Identities = 171/242 (71%), Gaps = 9/242 (4%)
Strand=Plus/Plus
Query 37370 CCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttttt 37429
||||||||| || ||| || | ||| |||||||||||| || || || | ||||
Sbjct 1324 CCAATCTGCTTTC--TTTGCCAGA--CAACTGTTTCAATTGCATTGAACAG-GTGATTTT 1378
Query 37430 ttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489
||| | | |||| | | ||| || || | |||||| | ||||| || ||||||||| |
Sbjct 1379 TTCCTTAGGATCTTTGACATATGTTTCCAACAGTAAATTTTACATCTCTGAGTGAATACT 1438
Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAA- 37548
|||||| || ||||| || |||| ||| | ||| || | |||||| || || |
Sbjct 1439 TTCAATGGCAATCTGGAACCCATGAAATGCACGAGCCTCTCGAACTTGAACTTCTTTCAT 1498
Query 37549 -AAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGA 37607
|||| | | ||||| |||||| ||| ||||||||| || ||||||| |||||
Sbjct 1499 GAAAAACCC--AGCTAGGTTTTCGAGAACAATCCCATCAGAGGCAACAAAGAATGCAAGG 1556
Query 37608 AC 37609
||
Sbjct 1557 AC 1558
>seq54299
Length=354826
Score = 91.5 bits (100), Expect = 2e-13
Identities = 93/120 (78%), Gaps = 1/120 (1%)
Strand=Plus/Plus
Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234
||| |||||||||||||| | ||| |||||||| |||| ||||| ||||| |||||
Sbjct 292868 ACAAGCAAAATCACAATGAAGACCCTCATCTCTTGAAATCAGCTCATTTGAAAAAGTTAA 292927
Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAA 37294
||||||||||| || | ||| || | ||||||||| || |||||| | || ||| ||
Sbjct 292928 ACCTGGCATTAAGCCCCGTTTCTTCAACCAAAATATGGC-ACAAAAGCTGCATTAAAAAA 292986
>seq1692948
Length=159645
Score = 82.4 bits (90), Expect = 9e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 37397 AATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATC 37456
|| ||| |||||||| | || | || ||||| | | |||| | | ||| || ||
Sbjct 120175 AACTGTCTCAATTGCACTGAACAAGTGATTATTTTCCTTAGGATCTTTGAGATATGTTTC 120116
Query 37457 AATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516
| |||||||| ||||| || ||||||||||||||||| || |||| ||| ||||||||
Sbjct 120115 CAACAGTAAACTGTACATATCTGAGTGAATATTTTCAATGGCAATCTCAAACCCATAAAA 120056
Query 37517 ACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAAC 37576
| ||| | | | |||||| || || | || | ||| | |||||| |||
Sbjct 120055 CGCACGAGCCTTTGGAACTTGAACTTCTTTCATGAAATGCCCAGCCAGGTTTTCGAGAAC 119996
Query 37577 TATCCCATCACTAGCTGCAAAGAAAGCAAGAAC 37609
||| | ||| | |||||||| ||||| ||
Sbjct 119995 AATCTCGTCAGAGACAGCAAAGAATGCAAGGAC 119963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579282394962560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |