Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq224353 127 2e-24 seq236632 111 2e-19 seq1488072 102 9e-17 seq324985 102 9e-17 seq54299 91.5 2e-13 seq1692948 82.4 9e-11 >seq224353 Length=132916 Score = 127 bits (140), Expect = 2e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 37397 AATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATC 37456 |||||| |||||||| || || || || ||||| | | |||| | | ||| || || Sbjct 9219 AATTGTCTCAATTGCATTGAATAGGTGATTATTTTCCTTAGGATCTTTGACATATGTTTC 9160 Query 37457 AATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516 | |||||||||||||| || ||||||||||||||||| || ||||| || |||||||| Sbjct 9159 CAACAGTAAACTATACATCTCTGAGTGAATATTTTCAATGGCAATCTGGAACCCATAAAA 9100 Query 37517 ACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAAC 37576 | ||| || | | |||||| || || | || | | |||||| | ||||| ||| Sbjct 9099 TGCACGAGCCTCTGGAACTTGAACTTCTTTCATGAAACGCCTAGCTAGGATTTCAAGAAC 9040 Query 37577 TATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 ||||||||| | |||||||| ||||| ||| | || || || | |||||| Sbjct 9039 AATCCCATCAAATGTAGCAAAGAATGCAAGGTCATGAGTGATGAAGTGCTTCTCATCA 8982 >seq236632 Length=228148 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 37404 TCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGT 37463 ||||||||||| || | || ||||| | | |||| | | ||| || || | ||| Sbjct 117309 TCAATTGCTTTGAACAAGTGATTATTTTCCTTAGGATCTTTGACATATGTTTCCAACAGT 117368 Query 37464 AAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTA 37523 ||||| ||||| || ||||||||||||||||| || ||||| || |||||||| | | Sbjct 117369 AAACTGTACATCTCTGAGTGAATATTTTCAATGGCAATCTGGAACCCATAAAATGCACGA 117428 Query 37524 GCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCA 37583 || | || | ||||| || || | || | | |||| | ||||| ||| |||||| Sbjct 117429 GCCTTTGAAACTTGAAATTCTTTCATGAAACGCCTAGCAAGGTTTTTGAGAACAATCCCA 117488 Query 37584 TCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 ||| || |||||||| ||||| |||| | || || || | |||||| Sbjct 117489 TCAGAGGCAGCAAAGAATGCAAGGACATGACTGATGAAGTGCTTCTCATCA 117539 >seq1488072 Length=30855 Score = 102 bits (112), Expect = 9e-17 Identities = 171/242 (71%), Gaps = 9/242 (4%) Strand=Plus/Minus Query 37370 CCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttttt 37429 ||||||||| || ||| || | ||| |||||||||||| || || || | |||| Sbjct 29358 CCAATCTGCTTTC--TTTGCCAGA--CAACTGTTTCAATTGCATTGAACAG-GTGATTTT 29304 Query 37430 ttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 ||| | | |||| | | ||| || || | |||||| | ||||| || ||||||||| | Sbjct 29303 TTCCTTAGGATCTTTGACATATGTTTCCAACAGTAAATTTTACATCTCTGAGTGAATACT 29244 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAA- 37548 |||||| || ||||| || |||| ||| | ||| || | |||||| || || | Sbjct 29243 TTCAATGGCAATCTGGAACCCATGAAATGCACGAGCCTCTCGAACTTGAACTTCTTTCAT 29184 Query 37549 -AAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGA 37607 |||| | | ||||| |||||| ||| ||||||||| || ||||||| ||||| Sbjct 29183 GAAAAACCC--AGCTAGGTTTTCGAGAACAATCCCATCAGAGGCAACAAAGAATGCAAGG 29126 Query 37608 AC 37609 || Sbjct 29125 AC 29124 >seq324985 Length=9845 Score = 102 bits (112), Expect = 9e-17 Identities = 171/242 (71%), Gaps = 9/242 (4%) Strand=Plus/Plus Query 37370 CCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttttt 37429 ||||||||| || ||| || | ||| |||||||||||| || || || | |||| Sbjct 1324 CCAATCTGCTTTC--TTTGCCAGA--CAACTGTTTCAATTGCATTGAACAG-GTGATTTT 1378 Query 37430 ttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 ||| | | |||| | | ||| || || | |||||| | ||||| || ||||||||| | Sbjct 1379 TTCCTTAGGATCTTTGACATATGTTTCCAACAGTAAATTTTACATCTCTGAGTGAATACT 1438 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAA- 37548 |||||| || ||||| || |||| ||| | ||| || | |||||| || || | Sbjct 1439 TTCAATGGCAATCTGGAACCCATGAAATGCACGAGCCTCTCGAACTTGAACTTCTTTCAT 1498 Query 37549 -AAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGA 37607 |||| | | ||||| |||||| ||| ||||||||| || ||||||| ||||| Sbjct 1499 GAAAAACCC--AGCTAGGTTTTCGAGAACAATCCCATCAGAGGCAACAAAGAATGCAAGG 1556 Query 37608 AC 37609 || Sbjct 1557 AC 1558 >seq54299 Length=354826 Score = 91.5 bits (100), Expect = 2e-13 Identities = 93/120 (78%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234 ||| |||||||||||||| | ||| |||||||| |||| ||||| ||||| ||||| Sbjct 292868 ACAAGCAAAATCACAATGAAGACCCTCATCTCTTGAAATCAGCTCATTTGAAAAAGTTAA 292927 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAA 37294 ||||||||||| || | ||| || | ||||||||| || |||||| | || ||| || Sbjct 292928 ACCTGGCATTAAGCCCCGTTTCTTCAACCAAAATATGGC-ACAAAAGCTGCATTAAAAAA 292986 >seq1692948 Length=159645 Score = 82.4 bits (90), Expect = 9e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 37397 AATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATC 37456 || ||| |||||||| | || | || ||||| | | |||| | | ||| || || Sbjct 120175 AACTGTCTCAATTGCACTGAACAAGTGATTATTTTCCTTAGGATCTTTGAGATATGTTTC 120116 Query 37457 AATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516 | |||||||| ||||| || ||||||||||||||||| || |||| ||| |||||||| Sbjct 120115 CAACAGTAAACTGTACATATCTGAGTGAATATTTTCAATGGCAATCTCAAACCCATAAAA 120056 Query 37517 ACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAAC 37576 | ||| | | | |||||| || || | || | ||| | |||||| ||| Sbjct 120055 CGCACGAGCCTTTGGAACTTGAACTTCTTTCATGAAATGCCCAGCCAGGTTTTCGAGAAC 119996 Query 37577 TATCCCATCACTAGCTGCAAAGAAAGCAAGAAC 37609 ||| | ||| | |||||||| ||||| || Sbjct 119995 AATCTCGTCAGAGACAGCAAAGAATGCAAGGAC 119963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579282394962560