Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09]
1,760,464 sequences; 22,103,635,615 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq1265268 158 6e-34
seq745658 149 3e-31
seq613168 138 6e-28
seq1412493 132 2e-26
seq335002 132 2e-26
seq1440344 129 3e-25
>seq1265268
Length=178387
Score = 158 bits (174), Expect = 6e-34
Identities = 203/279 (73%), Gaps = 1/279 (0%)
Strand=Plus/Minus
Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947
||| |||||||| || | |||| |||||| | || ||| ||| |||||| | || |||
Sbjct 26021 ATTAGGACAGAACAATTACCAAGTAGCATTGTCCTGGACTCTCTTCATAAAGAGATATGG 25962
Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007
|||||| || |||| || |||| ||| ||||| ||||||| || || || || ||| |
Sbjct 25961 AATCCATATACCATAGAACAAATATCTTGCTCTATTTTCTTCCTTGCCATGGTTTTTTCT 25902
Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067
| || || || |||||| |||| | |||||||| || || || | || || |||
Sbjct 25901 CAAATTCAAAAAGTCAAAA-TATCAGCATGCCATGGCTCCAAGTATACAGTGAAGGCACC 25843
Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127
|||||||| ||||| ||||||||||| || | ||||| ||||| || || ||||||
Sbjct 25842 CTTTCTTTTGCCTCCTCCTTGATCTACATAGCGAGCAGTATCATTAAACACACGCAACAT 25783
Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAAT 26166
||| || | ||| |||| || ||||| | ||| ||
Sbjct 25782 TGGCACAATACCATTTGATGTGCCATTTGTTCCATGTAT 25744
>seq745658
Length=337835
Score = 149 bits (164), Expect = 3e-31
Identities = 188/256 (73%), Gaps = 2/256 (1%)
Strand=Plus/Plus
Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947
||| ||| |||| || |||| |||||| | | ||| || |||||| | ||||||
Sbjct 230434 ATTAGGATAGAACAATGACCAAGTAGCATTGTCTTGGACTCGCTTCATAAAGAGATCTGG 230493
Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007
|||||| | |||| || |||||||| || || ||||||| || || || || ||| |
Sbjct 230494 AATCCATAGACCATAGAACAAATCTCTTGCCCTGTTTTCTTCCTTGCCATGGTTTTTTAT 230553
Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067
| ||| || || |||||| |||| | |||||||| || || || |||| || |||
Sbjct 230554 CAAATCCAAAAAGTCAAAA-TATCAGCATGCCATGGATCGAAGTATATAGTGAAGGCACC 230612
Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127
|||||||| ||||| ||||||||||| || | ||||| ||||| || || | ||||||
Sbjct 230613 CTTTCTTTTGCCTCCTCCTTGATCTACATAGCAAGCAGTATCATTAAACACATGCAACAT 230672
Query 26128 TGGAACTAATCCAGTT 26143
||| || ||| | |||
Sbjct 230673 TGGCAC-AATACCGTT 230687
>seq613168
Length=425085
Score = 138 bits (152), Expect = 6e-28
Identities = 188/260 (72%), Gaps = 3/260 (1%)
Strand=Plus/Minus
Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947
||| |||||||| || |||| |||||| | || ||| || |||||| | |||| |
Sbjct 409334 ATTAGGACAGAACAATGACCAAGTAGCATTGTCCTAGACTCGCTTCATAAAGAGATCTAG 409275
Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007
||| || | |||| || |||||||| || || ||||||| || || || || |||||
Sbjct 409274 AATACATAGACCATAGAACAAATCTCTTGCCCTGTTTTCTTCCTTGCCATGGTTTTTTTT 409215
Query 26008 T--AGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTA 26065
| | | || || |||||| |||| | |||||||| || || || ||||| || |
Sbjct 409214 CTCAAAACCAAAAAGTCAAAA-TATCGGCATGCCATGGCTCCAAGTATATAGCGAAGGCA 409156
Query 26066 CCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAAC 26125
|| || ||||| ||||| ||||||||||| || | ||||| ||||| || || ||||
Sbjct 409155 CCCTTGCTTTTGCCTCCTCCTTGATCTACATAGCGAGCAGTATCATTAAACACACGCAAC 409096
Query 26126 ATTGGAACTAATCCAGTTGA 26145
||||| || | ||| ||||
Sbjct 409095 ATTGGCACAATACCATTTGA 409076
>seq1412493
Length=108133
Score = 132 bits (146), Expect = 2e-26
Identities = 187/259 (72%), Gaps = 3/259 (1%)
Strand=Plus/Minus
Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947
||| ||| |||| || |||| |||||| | || ||| || |||||| | ||||||
Sbjct 68150 ATTAGGATAGAACAATGACCAAGTAGCATTGTCCTGGACTCGCTTCATAAAGAGATCTGG 68091
Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007
|||||| | ||| || |||| ||| || | ||||||| || || || || ||| |
Sbjct 68090 AATCCATAGACTATAGAACAAATATCTTGCCTTGTTTTCTTCCTTGCCATGTTTTTTTCT 68031
Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067
| ||| || || |||||| |||| | |||||||| || || || | | | || |||
Sbjct 68030 CAAATCCAAAAAGTCAAAA-TATCAGCATGCCATGGCTCCAAGTATACAACGAAGGCACC 67972
Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127
|||||||| ||||| ||||||||||| || | ||||| ||||| || || ||||||
Sbjct 67971 CTTTCTTTTGCCTCCTCCTTGATCTACATAGCGAGCAGTATCATTAAACACACACAACAT 67912
Query 26128 TGGAACTAAT-CCAGTTGA 26145
||| | |||| ||| ||||
Sbjct 67911 TGGCA-TAATACCATTTGA 67894
>seq335002
Length=192544
Score = 132 bits (146), Expect = 2e-26
Identities = 150/201 (75%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992
|||||| | ||| | | ||| | |||| |||||| ||| | ||||| | ||||| ||
Sbjct 28083 CATAAAGAGGTCTAGCACCCAAAGTGCAAAAAATAGATCACGTGCTCTATTCTCTTCCTT 28024
Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052
|| || |||||| | | || || || ||||||| ||||| |||||||| |||| ||
Sbjct 28023 CCCATGGTTCTTTCTCAACTCCAAAAACTCAAAAACATCTGCATGCCATGGCTCTAGGTA 27964
Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112
|| ||||| ||| || ||||| |||||||||||||| || || | ||||| |||||
Sbjct 27963 CATGGCAAATGCACCCTTCCTTTTGCCTCCACCTTGATCAACATAACGAGCAGTATCATT 27904
Query 26113 GAAAACTTTCAACATTGGAAC 26133
||| || |||||||||| ||
Sbjct 27903 GAATACCCTCAACATTGGCAC 27883
>seq1440344
Length=131763
Score = 129 bits (142), Expect = 3e-25
Identities = 184/258 (71%), Gaps = 1/258 (0%)
Strand=Plus/Plus
Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947
||| |||||||| || |||| |||||| | || ||| || ||||| | ||||||
Sbjct 99964 ATTAGGACAGAACAATGACCAAGTAGCATTGTCCTAGACTCGCTTTATAAAGAGATCTGG 100023
Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007
| |||| | |||| || |||| ||| || || ||||||| || || || || ||| |
Sbjct 100024 ACTCCATAGACCATAGAAAAAATATCTTGCACTGTTTTCTTCCTTGCCATGGTTTTTTCT 100083
Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067
| ||| || || |||||| |||| | |||||||| || || || | ||| || |||
Sbjct 100084 CAAATCCAAAAAGTCAAAA-TATCAGCATGCCATGGCTCCAAGTATACAGCGAAGGAACC 100142
Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127
|||||||| ||||| ||||||||||| || |||| ||||| || || ||||||
Sbjct 100143 CTTTCTTTTGCCTCCTCCTTGATCTACATAGTGATCAGTATCATTAAACACACGCAACAT 100202
Query 26128 TGGAACTAATCCAGTTGA 26145
| | || | ||| ||||
Sbjct 100203 TAGCACAATACCATTTGA 100220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 247610861058800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |