Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1265268 158 6e-34 seq745658 149 3e-31 seq613168 138 6e-28 seq1412493 132 2e-26 seq335002 132 2e-26 seq1440344 129 3e-25 >seq1265268 Length=178387 Score = 158 bits (174), Expect = 6e-34 Identities = 203/279 (73%), Gaps = 1/279 (0%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 ||| |||||||| || | |||| |||||| | || ||| ||| |||||| | || ||| Sbjct 26021 ATTAGGACAGAACAATTACCAAGTAGCATTGTCCTGGACTCTCTTCATAAAGAGATATGG 25962 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 |||||| || |||| || |||| ||| ||||| ||||||| || || || || ||| | Sbjct 25961 AATCCATATACCATAGAACAAATATCTTGCTCTATTTTCTTCCTTGCCATGGTTTTTTCT 25902 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | || || || |||||| |||| | |||||||| || || || | || || ||| Sbjct 25901 CAAATTCAAAAAGTCAAAA-TATCAGCATGCCATGGCTCCAAGTATACAGTGAAGGCACC 25843 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 |||||||| ||||| ||||||||||| || | ||||| ||||| || || |||||| Sbjct 25842 CTTTCTTTTGCCTCCTCCTTGATCTACATAGCGAGCAGTATCATTAAACACACGCAACAT 25783 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAAT 26166 ||| || | ||| |||| || ||||| | ||| || Sbjct 25782 TGGCACAATACCATTTGATGTGCCATTTGTTCCATGTAT 25744 >seq745658 Length=337835 Score = 149 bits (164), Expect = 3e-31 Identities = 188/256 (73%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 ||| ||| |||| || |||| |||||| | | ||| || |||||| | |||||| Sbjct 230434 ATTAGGATAGAACAATGACCAAGTAGCATTGTCTTGGACTCGCTTCATAAAGAGATCTGG 230493 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 |||||| | |||| || |||||||| || || ||||||| || || || || ||| | Sbjct 230494 AATCCATAGACCATAGAACAAATCTCTTGCCCTGTTTTCTTCCTTGCCATGGTTTTTTAT 230553 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | ||| || || |||||| |||| | |||||||| || || || |||| || ||| Sbjct 230554 CAAATCCAAAAAGTCAAAA-TATCAGCATGCCATGGATCGAAGTATATAGTGAAGGCACC 230612 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 |||||||| ||||| ||||||||||| || | ||||| ||||| || || | |||||| Sbjct 230613 CTTTCTTTTGCCTCCTCCTTGATCTACATAGCAAGCAGTATCATTAAACACATGCAACAT 230672 Query 26128 TGGAACTAATCCAGTT 26143 ||| || ||| | ||| Sbjct 230673 TGGCAC-AATACCGTT 230687 >seq613168 Length=425085 Score = 138 bits (152), Expect = 6e-28 Identities = 188/260 (72%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 ||| |||||||| || |||| |||||| | || ||| || |||||| | |||| | Sbjct 409334 ATTAGGACAGAACAATGACCAAGTAGCATTGTCCTAGACTCGCTTCATAAAGAGATCTAG 409275 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 ||| || | |||| || |||||||| || || ||||||| || || || || ||||| Sbjct 409274 AATACATAGACCATAGAACAAATCTCTTGCCCTGTTTTCTTCCTTGCCATGGTTTTTTTT 409215 Query 26008 T--AGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTA 26065 | | | || || |||||| |||| | |||||||| || || || ||||| || | Sbjct 409214 CTCAAAACCAAAAAGTCAAAA-TATCGGCATGCCATGGCTCCAAGTATATAGCGAAGGCA 409156 Query 26066 CCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAAC 26125 || || ||||| ||||| ||||||||||| || | ||||| ||||| || || |||| Sbjct 409155 CCCTTGCTTTTGCCTCCTCCTTGATCTACATAGCGAGCAGTATCATTAAACACACGCAAC 409096 Query 26126 ATTGGAACTAATCCAGTTGA 26145 ||||| || | ||| |||| Sbjct 409095 ATTGGCACAATACCATTTGA 409076 >seq1412493 Length=108133 Score = 132 bits (146), Expect = 2e-26 Identities = 187/259 (72%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 ||| ||| |||| || |||| |||||| | || ||| || |||||| | |||||| Sbjct 68150 ATTAGGATAGAACAATGACCAAGTAGCATTGTCCTGGACTCGCTTCATAAAGAGATCTGG 68091 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 |||||| | ||| || |||| ||| || | ||||||| || || || || ||| | Sbjct 68090 AATCCATAGACTATAGAACAAATATCTTGCCTTGTTTTCTTCCTTGCCATGTTTTTTTCT 68031 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | ||| || || |||||| |||| | |||||||| || || || | | | || ||| Sbjct 68030 CAAATCCAAAAAGTCAAAA-TATCAGCATGCCATGGCTCCAAGTATACAACGAAGGCACC 67972 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 |||||||| ||||| ||||||||||| || | ||||| ||||| || || |||||| Sbjct 67971 CTTTCTTTTGCCTCCTCCTTGATCTACATAGCGAGCAGTATCATTAAACACACACAACAT 67912 Query 26128 TGGAACTAAT-CCAGTTGA 26145 ||| | |||| ||| |||| Sbjct 67911 TGGCA-TAATACCATTTGA 67894 >seq335002 Length=192544 Score = 132 bits (146), Expect = 2e-26 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| | ||| | | ||| | |||| |||||| ||| | ||||| | ||||| || Sbjct 28083 CATAAAGAGGTCTAGCACCCAAAGTGCAAAAAATAGATCACGTGCTCTATTCTCTTCCTT 28024 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || || |||||| | | || || || ||||||| ||||| |||||||| |||| || Sbjct 28023 CCCATGGTTCTTTCTCAACTCCAAAAACTCAAAAACATCTGCATGCCATGGCTCTAGGTA 27964 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 || ||||| ||| || ||||| |||||||||||||| || || | ||||| ||||| Sbjct 27963 CATGGCAAATGCACCCTTCCTTTTGCCTCCACCTTGATCAACATAACGAGCAGTATCATT 27904 Query 26113 GAAAACTTTCAACATTGGAAC 26133 ||| || |||||||||| || Sbjct 27903 GAATACCCTCAACATTGGCAC 27883 >seq1440344 Length=131763 Score = 129 bits (142), Expect = 3e-25 Identities = 184/258 (71%), Gaps = 1/258 (0%) Strand=Plus/Plus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 ||| |||||||| || |||| |||||| | || ||| || ||||| | |||||| Sbjct 99964 ATTAGGACAGAACAATGACCAAGTAGCATTGTCCTAGACTCGCTTTATAAAGAGATCTGG 100023 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 | |||| | |||| || |||| ||| || || ||||||| || || || || ||| | Sbjct 100024 ACTCCATAGACCATAGAAAAAATATCTTGCACTGTTTTCTTCCTTGCCATGGTTTTTTCT 100083 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | ||| || || |||||| |||| | |||||||| || || || | ||| || ||| Sbjct 100084 CAAATCCAAAAAGTCAAAA-TATCAGCATGCCATGGCTCCAAGTATACAGCGAAGGAACC 100142 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 |||||||| ||||| ||||||||||| || |||| ||||| || || |||||| Sbjct 100143 CTTTCTTTTGCCTCCTCCTTGATCTACATAGTGATCAGTATCATTAAACACACGCAACAT 100202 Query 26128 TGGAACTAATCCAGTTGA 26145 | | || | ||| |||| Sbjct 100203 TAGCACAATACCATTTGA 100220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247610861058800