Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq197760 89.7 8e-12 >seq197760 Length=36818 Score = 89.7 bits (98), Expect = 8e-12 Identities = 166/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||||||||||||| || ||||| |||||||| ||| |||| || |||||| | | | Sbjct 15787 TTGGTGACGGCCTTAGTTCCCTCAGAGACGGCATGCTTGGCGAGCTCGCCGGGAAGAACA 15728 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGAT--CGTGTTGCGCTTGTTAGTGCGCG 1485592 || || || ||||| | ||| | || ||| ||||| | |||| | ||| | Sbjct 15727 AGTTTAACTGCAGTCTGAACCTCCCT--TGACGACAGCGTGTCCCTCTTGCCATAGCGAG 15670 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 || | |||| | | || | || || || ||||| || ||||||| Sbjct 15669 TGAGCTTCGAAGACTCGCCTGCAACTTTCTCAAAGATATCATTCACAAAAGAATTCATGA 15610 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAA 1485712 | ||||| || ||| |||||||||| | ||| ||||| ||||| || ||||||||||| | Sbjct 15609 TGGACATGGACTTGCTGGAGATGCCGATGTCAGGGTGAACCTGTTTCAGCACCTTGTACA 15550 Query 1485713 CA 1485714 || Sbjct 15549 CA 15548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7728977814843696