Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq335002 145 2e-29 seq1484201 120 7e-22 seq1442127 95.1 3e-14 seq547320 89.7 1e-12 seq272600 86.0 1e-11 seq1051577 84.2 5e-11 >seq335002 Length=192544 Score = 145 bits (160), Expect = 2e-29 Identities = 361/543 (66%), Gaps = 9/543 (2%) Strand=Plus/Plus Query 110469 CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGG--ACAATTGGCTTCTTGCT 110526 |||||| ||||||| || || || | || || | ||| ||| ||| | |||| Sbjct 27664 CATGCTTCTCCTACACTTTTCAATGTTGGGAC--ACCAAGGCCACAGTTGAGTAGCTGCT 27721 Query 110527 TTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTG 110586 | ||| | | || || |||||| ||||| || || |||||| |||| || ||| || Sbjct 27722 TCCTTGTTTGTATGAAAGATGATAGCATTGAGGGGATATATGATACTCTAAAGGAATGTG 27781 Query 110587 CTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAA-A 110645 || | || ||| |||||||| ||||| || || ||| | ||||| ||| | Sbjct 27782 CTGTAATAAGCAAATCAGCTGGAGGACTTGGTGTTTCAGTACATAACATTCGTGCAACCA 27841 Query 110646 GGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTC 110705 | || | |||| | | | || ||| | || | ||| |||| |||||||| || || Sbjct 27842 GTAGTTA-TATCCGAGGAACTAATGGTACATCGAATGGTATTGTGCCAATGTTGAGGGTA 27900 Query 110706 TTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCT 110762 ||||| || ||||| ||||| |||||||||| || || || || ||||||| Sbjct 27901 TTCAATGATACTGCTCGTTATGTTGATCAAGGTGGAGGCAAAAGGAAGGGTGCATTTGCC 27960 Query 110763 ATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAA 110822 || || || || || |||||| ||||| | ||||| || || || | | || || || Sbjct 27961 ATGTACCTAGAGCCATGGCATGCAGATGTTTTTGAGTTTTTGGAGTTGAGAAAGAACCAT 28020 Query 110823 GGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTC 110882 || ||||| | |||||||||||| |||||| |||| | ||| | ||| | || Sbjct 28021 GGGAAGGAAGAGAATAGAGCACGTGATCTATTTTTTGCACTTTGGGTGCTAGACCTCTTT 28080 Query 110883 ATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGT 110942 |||||| | || || || ||| | || | | | ||||| || |||| || Sbjct 28081 ATGAAAAGGGTCCAGGAGAATTCTACACGGACATTATTTTGTCCCAATGAAGCTCCCGGG 28140 Query 110943 CTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGC 111002 || ||||| | || |||| |||||||| || ||| |||||||| |||| || Sbjct 28141 CTTGCTGATTGCTGGGGTGAAGAATTTGAAGAACTGTACATGAAATATGAGCAAGAGGGT 28200 Query 111003 AAG 111005 ||| Sbjct 28201 AAG 28203 >seq1484201 Length=82972 Score = 120 bits (132), Expect = 7e-22 Identities = 142/187 (76%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || |||||||||||| ||||| ||||| |||||| | ||||| || ||||||||| Sbjct 62442 AGGCATTTGAATGACGGTGATTTTGTTCTTTTCAATCGACAACCTAGTCTTCATAAAATG 62501 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGA-CATTTCGATTAAA--TGT 305421 ||||| |||| || | ||||| || || | ||| | |||||||| | || ||| Sbjct 62502 TCTATCATGGGGCACAGGATCAAA--ATCATGCCATATTCAACATTTCGACTGAACTTGT 62559 Query 305422 AAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACC 305481 ||| | | || |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 62560 CAGT--TACATCACCATATAATGCTGATTTTGATGGAGATGAAATGAATATGCACGTACC 62617 Query 305482 TCAATCA 305488 ||| ||| Sbjct 62618 TCAGTCA 62624 >seq1442127 Length=491714 Score = 95.1 bits (104), Expect = 3e-14 Identities = 134/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| || | ||||| |||||| | ||||| || ||||| ||| Sbjct 379481 AGGCATTTGAATGATGGAGACTTCGTTCTTTTCAATCGACAACCTAGTCTTCATAAGATG 379422 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA--TGTAA 305423 ||||| |||| || | ||||| | | | | ||||||||| |||| ||| | Sbjct 379421 TCTATCATGGGGCACAGGATCAAAATCATGCCATACTCAACATTTCGACTAAACTTGTCA 379362 Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || | | | || |||||||| ||||||||||| ||||||||||||||||| ||||| | Sbjct 379361 GT-CACATCC-CCATATAATGCTGATTTTGATGGTGATGAAATGAATATGCACGTACCAC 379304 Query 305484 AATCA 305488 | ||| Sbjct 379303 AGTCA 379299 >seq547320 Length=309019 Score = 89.7 bits (98), Expect = 1e-12 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 113781 ttttttttCG--TAAAAATATCTGTCGCAACAAAATGACACTTTGCATGACCATGTTTTC 113838 ||||||||| |||||||||| | ||||||||||| ||||| ||||| |||||||||| Sbjct 98557 TTTTTTTTCCATTAAAAATATCAATTGCAACAAAATGGCACTTAGCATGCCCATGTTTTC 98498 Query 113839 CAGTTTTTGATGTTGATA 113856 |||||||||| || |||| Sbjct 98497 CAGTTTTTGAAGTGGATA 98480 >seq272600 Length=290802 Score = 86.0 bits (94), Expect = 1e-11 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 113781 ttttttttCGT-AAAAATATCTGTCGCAACAAAATGACACTTTGCATGACCATGTTTTCC 113839 ||||||||| | ||||||||| | ||||||||||| ||||| ||||| ||||||||||| Sbjct 281479 TTTTTTTTCATTAAAAATATCAATTGCAACAAAATGGCACTTAGCATGCCCATGTTTTCC 281538 Query 113840 AGTTTTTGATGTTGATA 113856 |||||||| || |||| Sbjct 281539 GGTTTTTGAAGTGGATA 281555 >seq1051577 Length=50517 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 113791 TAAAAATATCTGTCGCAACAAAATGACACTTTGCATGACCATGTTTTCCAGTTTTTGATG 113850 |||||||||| | ||||||||||| ||||| ||||| |||||||||||||||||||| | Sbjct 22912 TAAAAATATCAATTGCAACAAAATGGCACTTAGCATGCCCATGTTTTCCAGTTTTTGAAG 22971 Query 113851 TTGATA 113856 | |||| Sbjct 22972 TGGATA 22977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1160043115757904