Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq1422260 86.0 1e-11 seq1285380 84.2 5e-11 >seq1422260 Length=115997 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 298815 ACTGCTCTTGCAAAAGAAGGCAAACTAGATCCTATGATTGGTCGCCAGAAAGAATTGTCT 298874 ||||| | ||||| ||||| ||| |||||||||| ||||| || | || ||| | Sbjct 4425 ACTGCCCGTGCAAGTGAAGGGAAAATAGATCCTATTATTGGCCGTGATAAGGAAGTAGAA 4484 Query 298875 GCATTGATTGAGACTCTTGCTCGCAAAACCAAAAAGAATGCTATTCTCACTGGTGAAGCT 298934 || || ||| ||||||||||| ||||||||| ||| | |||||| |||||| | Sbjct 4485 AGGGTGGTTCAGATTCTTGCTCGCAGAACCAAAAATAATCCAATTCTCTTAGGTGAACCA 4544 Query 298935 GGTGTAGGTAAAACACAAATCATCGACGGGCTTGCACAAGCTATTGCTGATGGTAACGTA 298994 || ||||| ||||| || || ||||| || | ||||| ||| || || ||| Sbjct 4545 GGAGTAGGAAAAACTGCCATTGCAGAAGGGCTAGCTATTGGTATTGTTGAAGGAAATGTA 4604 Query 298995 CCTGA 298999 || || Sbjct 4605 CCCGA 4609 >seq1285380 Length=65969 Score = 84.2 bits (92), Expect = 5e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 298815 ACTGCTCTTGCAAAAGAAGGCAAACTAGATCCTATGATTGGTCGCCAGAAAGAATTGTCT 298874 ||||| | ||||| ||||| ||| |||||||||| ||||| || | || ||| | Sbjct 14940 ACTGCCCGTGCAAGTGAAGGGAAAATAGATCCTATTATTGGCCGTGATAAGGAAGTAGAA 14881 Query 298875 GCATTGATTGAGACTCTTGCTCGCAAAACCAAAAAGAATGCTATTCTCACTGGTGAAGCT 298934 || || ||| ||||||||||| ||||||||| ||| | |||||| |||||| | Sbjct 14880 AGGGTGGTTCAGATTCTTGCTCGCAGAACCAAAAATAATCCAATTCTCTTAGGTGAACCA 14821 Query 298935 GGTGTAGGTAAAAC 298948 || ||||| ||||| Sbjct 14820 GGAGTAGGAAAAAC 14807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1090017459747216