Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinus_20taeda_20[genbank_20GCA_5F000404065.3_202017-01-09] 1,760,464 sequences; 22,103,635,615 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq953416 98.7 9e-16 seq102530 98.7 9e-16 seq89475 98.7 9e-16 seq1486149 93.3 4e-14 seq1106782 93.3 4e-14 seq1321788 91.5 1e-13 seq304465 91.5 1e-13 seq407677 89.7 4e-13 seq8373 89.7 4e-13 seq850699 82.4 7e-11 seq336321 82.4 7e-11 >seq953416 Length=62966 Score = 98.7 bits (108), Expect = 9e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||||||||| | ||||| || || |||| || || ||||| |||| ||||| Sbjct 23987 CAACATGCAGATATTTGTCAAGACCCTAACTGGCAAGATAATCACTCTCGAGGTCGAGAG 23928 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| || || | ||||| ||| || ||||| |||||||| || || || Sbjct 23927 CTCTGATACCATTGACAATGTAAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGA 23868 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||||| | || || | | ||| ||||| |||||||||| | ||| | || ||| || Sbjct 23867 CCAGCAGTGTCTTATCTTTGCCGGAAAACAGCTCGAAGATGGTCGAACTCTCGCCGAATA 23808 Query 25351 CAATATTCAAAAAGAATCCACCATTCA 25377 ||||||||| || ||||| ||| |||| Sbjct 23807 CAATATTCAGAAGGAATCTACCCTTCA 23781 >seq102530 Length=63980 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||| ||||| | ||||| || | |||||| |||||||||| ||| | Sbjct 56422 ATGCAGATCTTTGTCAAAACCCTGACCGGCAAGACAATCACGCTCGAAGTCGAGAGCTCA 56481 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || || ||| ||||||||||| || || || ||||| Sbjct 56482 -GACACTATTGATAACGTGAAGGCGAAGATTCAGGATAAAGAGGGGATTCCTCCGGATCA 56540 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || ||| | || | | || |||||||| ||||||| || | | || ||| ||||| Sbjct 56541 ACAGAGATTGATCTTTGCAGGGAAACAACTTGAAGATGGGAGGACTCTCGCCGACTACAA 56600 Query 25354 TATTCAAAAAGAATCCAC 25371 |||||||| ||||| || Sbjct 56601 CATTCAAAAGGAATCTAC 56618 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | ||||| || | |||||| ||||||| || | Sbjct 4143 ATGCAGATCTTTGTCAAAACCCTGACCGGCAAGACAATCACGCTCGAAGTTGAGAGCTCG 4202 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || || ||| ||||||||||| || || || |||||| Sbjct 4203 GACACTATTGATAACGTGAAGGCGAAGATTCAGGATAAAGAGGGGATTCCTCCGGATCAG 4262 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | || | | || |||||||| ||||||| || | | | ||| ||||| Sbjct 4263 CAGAGATTGATCTTTGCAGGGAAACAACTTGAAGATGGGAGGACTCTAGCCGACTACAAC 4322 Query 25355 ATTCAAAAAGAATCCAC 25371 |||||||| ||||| || Sbjct 4323 ATTCAAAAGGAATCTAC 4339 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | ||||| || | ||||| | ||||||||| | Sbjct 3915 ATGCAGATCTTTGTCAAAACCCTGACCGGCAAGACAATCACTCTGGAAGTCGAAAGCTCT 3974 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || |||||| || || || || || || ||||||||| Sbjct 3975 GATACAATTGACAATGTCAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCCGATCAG 4034 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || || | | || ||||||||||| |||| | | | || |||||||||| Sbjct 4035 CAGAGGCTGATCTTTGCTGGGAAACAACTCGAGGATGGACGCACTCTCGCCGATTACAAT 4094 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || || || ||||| || |||| Sbjct 4095 ATCCAGAAGGAATCGACTCTTCA 4117 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | ||||| || | ||||| | ||||||||| | Sbjct 56194 ATGCAGATCTTTGTCAAAACCCTGACCGGCAAGACAATCACTCTGGAAGTCGAAAGCTCT 56253 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || |||||| || || || || || || ||||||||| Sbjct 56254 GATACAATTGACAATGTCAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCCGATCAG 56313 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || || | | || ||||||||||| |||| | | | || ||||||||| Sbjct 56314 CAGAGGCTGATCTTTGCTGGAAAACAACTCGAGGATGGACGCACTCTCGCCGATTACAAC 56373 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || || || ||||| || |||| Sbjct 56374 ATCCAGAAGGAATCGACTCTTCA 56396 >seq89475 Length=207895 Score = 98.7 bits (108), Expect = 9e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||||||||| | ||||| || || |||| || || ||||| |||| ||||| Sbjct 199891 CAACATGCAGATATTTGTCAAGACCCTAACTGGCAAGATAATCACTCTCGAGGTCGAGAG 199832 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| || || | ||||| ||| || ||||| |||||||| || || || Sbjct 199831 CTCTGATACCATTGACAATGTAAAGGCAAAGATCCAGGATAAGGAGGGTATTCCTCCTGA 199772 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||||| | || || | | ||| ||||| |||||||||| | ||| | || ||| || Sbjct 199771 CCAGCAGTGTCTTATCTTTGCCGGAAAACAGCTCGAAGATGGTCGAACTCTCGCCGAATA 199712 Query 25351 CAATATTCAAAAAGAATCCACCATTCA 25377 ||||||||| || ||||| ||| |||| Sbjct 199711 CAATATTCAGAAGGAATCTACCCTTCA 199685 >seq1486149 Length=44583 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||| ||||| | ||||| || | |||||| |||||||||| ||| | Sbjct 27030 ATGCAGATCTTTGTCAAAACCCTGACCGGCAAGACAATCACGCTCGAAGTCGAGAGCTCA 27089 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || || ||| ||||||||||| || || || ||||| Sbjct 27090 -GACACTATTGATAACGTGAAGGCGAAGATTCAGGATAAAGAGGGGATTCCTCCGGATCA 27148 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || ||| | || | | || |||||||| ||||||| || | | | ||| ||||| Sbjct 27149 ACAGAGATTGATCTTTGCAGGGAAACAACTTGAAGATGGGAGGACTCTAGCCGACTACAA 27208 Query 25354 TATTCAAAAAGAATCCAC 25371 |||||||| ||||| || Sbjct 27209 CATTCAAAAGGAATCTAC 27226 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | ||||| || | ||||| | ||||||||| | Sbjct 26802 ATGCAGATCTTTGTCAAAACCCTGACCGGCAAGACAATCACTCTGGAAGTCGAAAGCTCT 26861 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || |||||| || || || || || || ||||||||| Sbjct 26862 GATACAATTGACAATGTCAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCCGATCAG 26921 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || || | | || ||||||||||| |||| | | | || |||||||||| Sbjct 26922 CAGAGGCTGATCTTTGCTGGGAAACAACTCGAGGATGGACGCACTCTCGCCGATTACAAT 26981 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || || || ||||| || |||| Sbjct 26982 ATCCAGAAGGAATCGACTCTTCA 27004 >seq1106782 Length=21075 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||| ||||| | ||||| || | |||||| |||||||||| ||| | Sbjct 4142 ATGCAGATCTTTGTCAAAACCCTGACCGGCAAGACAATCACGCTCGAAGTCGAGAGCTCA 4201 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || || ||| ||||||||||| || || || ||||| Sbjct 4202 -GACACTATTGATAACGTGAAGGCGAAGATTCAGGATAAAGAGGGGATTCCTCCGGATCA 4260 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || ||| | || | | || |||||||| ||||||| || | | | ||| ||||| Sbjct 4261 ACAGAGATTGATCTTTGCAGGGAAACAACTTGAAGATGGGAGGACTCTAGCCGACTACAA 4320 Query 25354 TATTCAAAAAGAATCCAC 25371 |||||||| ||||| || Sbjct 4321 CATTCAAAAGGAATCTAC 4338 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | ||||| || | ||||| | ||||||||| | Sbjct 3914 ATGCAGATCTTTGTCAAAACCCTGACCGGCAAGACAATCACTCTGGAAGTCGAAAGCTCT 3973 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || |||||| || || || || || || ||||||||| Sbjct 3974 GATACAATTGACAATGTCAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCCGATCAG 4033 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || || | | || ||||||||||| |||| | | | || ||||||||| Sbjct 4034 CAGAGGCTGATCTTTGCTGGAAAACAACTCGAGGATGGACGCACTCTCGCCGATTACAAC 4093 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || || || ||||| || |||| Sbjct 4094 ATCCAGAAGGAATCGACTCTTCA 4116 >seq1321788 Length=180359 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||| ||||| || ||||||||| | |||||| | ||||| || ||| | Sbjct 154686 ATGCAGATCTTTGTCAAAACTTTGACCGGAAAAACAATCACGCTTGAAGTTGAGAGCTCA 154627 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || |||||| || || || || || || || || || Sbjct 154626 -GACACTATTGATAACGTTAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCTGACCA 154568 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||||| || | | || ||||||||||| |||| | | | ||| |||||||| Sbjct 154567 GCAGAGACTGATCTCTGCTGGAAAACAACTCGAGGATGGACGCACTTTCACAGATTACAA 154508 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 || || || ||||| || |||| Sbjct 154507 CATCCAGAAGGAATCGACTCTTCA 154484 >seq304465 Length=14918 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||| ||||| || ||||||||| | |||||| | ||||| || ||| | Sbjct 2454 ATGCAGATCTTTGTCAAAACTTTGACCGGAAAAACAATCACGCTTGAAGTTGAGAGCTCA 2395 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || |||||| || || || || || || || || || Sbjct 2394 -GACACTATTGATAACGTTAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCTGACCA 2336 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||||| || | | || ||||||||||| |||| | | | ||| |||||||| Sbjct 2335 GCAGAGACTGATCTCTGCTGGAAAACAACTCGAGGATGGACGCACTTTCACAGATTACAA 2276 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 || || || ||||| || |||| Sbjct 2275 CATCCAGAAGGAATCGACTCTTCA 2252 >seq407677 Length=102824 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||| ||||| | ||||| || | |||||| ||||||| || ||| | Sbjct 69007 ATGCAGATCTTTGTCAAAACCCTGACCGGCAAGACAATCACGCTCGAAGTTGAGAGCTCA 68948 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || || ||| ||||||||||| || || || ||||| Sbjct 68947 -GACACTATTGATAATGTGAAGGCGAAGATTCAGGATAAAGAGGGGATTCCTCCGGATCA 68889 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||| | || | | || ||||| || ||||||| || | | | ||| ||||| Sbjct 68888 GCAGAGATTGATCTTTGCAGGGAAACAGCTTGAAGATGGGAGGACTCTAGCCGACTACAA 68829 Query 25354 TATTCAAAAAGAATCCAC 25371 |||||||| ||||| || Sbjct 68828 CATTCAAAAGGAATCTAC 68811 >seq8373 Length=31397 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/203 (71%), Gaps = 7/203 (3%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCA 25232 |||||| | ||||| ||||| | ||||| || |||| ||| | ||||| || ||| Sbjct 8574 CATGCAGATCTTTGTCAAAACCCTCACCGGCAAGACGATAACGTTGGAAGTGGAGAGCTC 8633 Query 25233 ACGATA-CTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 | |||| | ||||| | |||||| || || ||||| || || || ||||| ||| Sbjct 8634 A-GATAACCATCGACAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCGCCGGAT 8692 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATT 25349 ||||| | || || | | ||| ||||| |||||||||| ||| || ||| | | Sbjct 8693 CAGCAGCGTCTGATATTTGCCGGAAAACAGCTCGAAGATGGCCGAACCCTGGCAG--ACT 8750 Query 25350 ACAATATTCAAAAAGAATCCACC 25372 ||||||||||||| ||||| ||| Sbjct 8751 ACAATATTCAAAAGGAATCTACC 8773 >seq850699 Length=98674 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 |||||| | ||||| |||| | ||||||||| | |||||| | |||| || ||| | Sbjct 26188 ATGCAAATCTTTGTCAAAAATCTGACCGGAAAAACAATCACGCTTGAAGCTGAGAGCTCA 26129 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || |||||| || || || || || || |||||| | Sbjct 26128 -GACACTATTGATAATGTTAAGACTAAAATTCAAGACAAGGAAGGGATTCCACCCGATTA 26070 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || || || | | || ||||||||||| |||| | | | ||| |||||||| Sbjct 26069 GCAGAGGCTGATCTTTGCTGGAAAACAACTCGAGGATGGATGCACTCTCACAGATTACAA 26010 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 || || || ||||| || |||| Sbjct 26009 CATCCAGAAGGAATCGACTCTTCA 25986 >seq336321 Length=2731 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 |||||| | ||||| |||| | ||||||||| | |||||| | |||| || ||| | Sbjct 2692 ATGCAAATCTTTGTCAAAAATCTGACCGGAAAAACAATCACGCTTGAAGCTGAGAGCTCA 2633 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || |||||| || || || || || || |||||| | Sbjct 2632 -GACACTATTGATAATGTTAAGACTAAAATTCAAGACAAGGAAGGGATTCCACCCGATTA 2574 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || || || | | || ||||||||||| |||| | | | ||| |||||||| Sbjct 2573 GCAGAGGCTGATCTTTGCTGGAAAACAACTCGAGGATGGATGCACTCTCACAGATTACAA 2514 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 || || || ||||| || |||| Sbjct 2513 CATCCAGAAGGAATCGACTCTTCA 2490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 435299741652480